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Report for CCDS26005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26005.1 Public Mus musculus 12 Tmem229b 23 108 98 CCDS HistoryNCBI Gene:268567Re-query CCDS DB by CCDS ID:26005.1Re-query CCDS DB by GeneID:268567See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056660.12 ENSMUSP00000053835.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056660.12Link to Ensembl Protein Viewer:ENSMUSP00000053835.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056660Re-query CCDS DB by Protein ID:ENSMUSP00000053835
Original member Current member EBI ENSMUST00000070174.13 ENSMUSP00000070637.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070174.13Link to Ensembl Protein Viewer:ENSMUSP00000070637.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070174Re-query CCDS DB by Protein ID:ENSMUSP00000070637
Original member Current member EBI ENSMUST00000174697.1 ENSMUSP00000134348.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174697.1Link to Ensembl Protein Viewer:ENSMUSP00000134348.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174697Re-query CCDS DB by Protein ID:ENSMUSP00000134348
Original member Current member EBI ENSMUST00000174072.7 ENSMUSP00000134376.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174072.7Link to Ensembl Protein Viewer:ENSMUSP00000134376.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174072Re-query CCDS DB by Protein ID:ENSMUSP00000134376
Original member Current member NCBI NM_001170401.2 NP_001163872.1 Accepted alive Link to Nucleotide Sequence:NM_001170401.2Link to Protein Sequence:NP_001163872.1Re-query CCDS DB by Nucleotide ID:NM_001170401Re-query CCDS DB by Protein ID:NP_001163872Link to BLAST:NP_001163872.1
Original member Current member NCBI NM_001364891.1 NP_001351820.1 Accepted alive Link to Nucleotide Sequence:NM_001364891.1Link to Protein Sequence:NP_001351820.1Re-query CCDS DB by Nucleotide ID:NM_001364891Re-query CCDS DB by Protein ID:NP_001351820Link to BLAST:NP_001351820.1
Original member Current member NCBI NM_001364892.1 NP_001351821.1 Accepted alive Link to Nucleotide Sequence:NM_001364892.1Link to Protein Sequence:NP_001351821.1Re-query CCDS DB by Nucleotide ID:NM_001364892Re-query CCDS DB by Protein ID:NP_001351821Link to BLAST:NP_001351821.1
Original member Current member NCBI NM_178745.5 NP_848860.1 Accepted alive Link to Nucleotide Sequence:NM_178745.5Link to Protein Sequence:NP_848860.1Re-query CCDS DB by Nucleotide ID:NM_178745Re-query CCDS DB by Protein ID:NP_848860Link to BLAST:NP_848860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163872.1 167 Q8BFQ2 167 100% 0 0
NP_001351820.1 167 Q8BFQ2 167 100% 0 0
NP_001351821.1 167 Q8BFQ2 167 100% 0 0
NP_848860.1 167 Q8BFQ2 167 100% 0 0

Chromosomal Locations for CCDS 26005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 78964652 78965155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGCTTCTGCCGAGCCCCTGACAGCGCTGTCTCGTTGGTACCTATATGCTATCCACGGCTACTTCTGCG
AGGTGATGTTTACAGCGGCCTGGGAGTTTGTGGTGAATTTTAACTGGAAGTTCCCGGGGGTCACGAGCGT
GTGGGCCCTCTTCATCTATGGCACCTCCATCCTGATCGTGGAGCGTATGTACCTTCGTCTGCGTGGCCGC
TGTCCTCTTCTGGTGCGCTGCGTCATCTACACTCTCTGGACTTACCTGTGGGAATTCACCACCGGCTTTA
TCCTACGCCAGTTCAACGCCTGTCCCTGGGACTACTCCCAGTTCGACTTTGATTTCATGGGCCTCATTAC
CCTGGAGTATGCTGTGCCCTGGTTCTGCGGGGCCCTCATCATGGAGCAGTTTATCATCCGCAACACCCTC
CGCCTGCGCTTTGACAAGGACGCAGAGCCTGGGGAGCCTGCCAGCCCACCAGCCCTGGCCAATGGCCACG
TCAAGACCGACTGA

Translation (167 aa):
MASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNFNWKFPGVTSVWALFIYGTSILIVERMYLRLRGR
CPLLVRCVIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITLEYAVPWFCGALIMEQFIIRNTL
RLRFDKDAEPGEPASPPALANGHVKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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