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Report for CCDS89374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89374.1 Public Mus musculus 19 A1cf 23 108 98 CCDS HistoryNCBI Gene:69865Re-query CCDS DB by CCDS ID:89374.1Re-query CCDS DB by GeneID:69865See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224304.1 ENSMUSP00000153542.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224304.1Link to Ensembl Protein Viewer:ENSMUSP00000153542.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224304Re-query CCDS DB by Protein ID:ENSMUSP00000153542
Original member Current member NCBI NM_001365078.1 NP_001352007.1 Accepted alive Link to Nucleotide Sequence:NM_001365078.1Link to Protein Sequence:NP_001352007.1Re-query CCDS DB by Nucleotide ID:NM_001365078Re-query CCDS DB by Protein ID:NP_001352007Link to BLAST:NP_001352007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352007.1 587 Q5YD48-2 587 100% 0 0

Chromosomal Locations for CCDS 89374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 31893100 31893198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31908792 31908926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31911106 31911236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31917884 31918122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31920822 31920986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31927108 31927205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31932425 31932698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31934652 31934833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31944964 31945100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31945786 31945937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 31947359 31947510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGGAATCAAATCACAAATCCGGGGATGGATTGAGCGGCACCCAGAAGGAAGCGGCACTCCGCGCACTGG
TCCAGCGCACAGGATATAGCTTGGTCCAGGAAAATGGACAAAGGAAGTATGGTGGCCCTCCACCAGGCTG
GGATTCTACACCCCCAGAAAGGGGCTGCGAGATTTTCATTGGGAAACTTCCCCGGGACCTCTTTGAGGAT
GAACTCATACCATTGTGTGAAAAAATTGGTAAAATTTATGAAATGAGATTGATGATGGATTTTAATGGTA
ACAACAGAGGCTATGCATTTGTAACATTCTCAAATAAGCAGGAAGCCAAGAATGCAATCAAGCAACTTAA
TAATTATGAAATTCGGACTGGCCGTCTCTTGGGAGTCTGTGCCAGTGTGGACAATTGCCGATTGTTTGTG
GGAGGAATCCCCAAAACCAAAAAGAGGGAAGAAATCTTATCAGAGATGAAAAAAGTCACAGAAGGAGTTG
TTGATGTCATTGTCTACCCAAGTGCTGCTGATAAAACCAAAAACCGGGGATTTGCCTTTGTGGAATATGA
GAGTCACCGAGCAGCCGCCATGGCTAGGCGGAGGCTGCTGCCAGGAAGAATTCAGTTGTGGGGACATCCT
ATTGCAGTAGACTGGGCAGAACCAGAAGTTGAAGTTGATGAGGACACAATGTCTTCCGTGAAAATCCTGT
ACGTAAGGAACCTTATGCTGTCTACCTCGGAAGAAATGATTGAAAAGGAATTCAACAGTATTAAACCAGG
TGCTGTGGAAAGAGTGAAGAAGATCCGAGACTACGCTTTTGTGCACTTCAGTAACCGAGAAGATGCAGTT
GAAGCCATGAAGGCTTTGAATGGCAAGGTGCTGGATGGTTCCCCAATAGAAGTGACCTTGGCCAAGCCAG
TGGACAAGGACAGTTATGTTAGGTACACCCGGGGCACCGGTGGCAGGAACACCATGCTGCAAGGAGAATA
CACCTACCCTCTGAGCCATGTTTATGACCCTACCACAACCTACCTTGGAGCTCCTGTCTTCTATACCCCC
CAAGCCTATGCAGCCATTCCAAGTCTTCATTTCCCAGCTACTAAAGGACATCTCAGCAACAGGGCTCTCA
TCAGGACCCCTTCTGTCAGAGGGGCTGCGGGGGTGAGAGGACTGGGCGGCCGTGGGTATTTGGCATACAC
AGGCCTGGGTCGAGGATACCACGTCAAAGGAGACAAGAGAGAAGACAAACTCTATGATCTTCTGCCTGGG
ATGGAGCTCACCCCGATGAATACTGTCTCTTTAAAACCACAAGGAATTAAACTTGCTCCTCAGATATTAG
AAGAAATCTGTCAGAAAAATAACTGGGGACAGCCAGTGTACCAACTGCATTCTGCCATTGGACAAGATCA
AAGACAGTTATTCCTCTACAAAGTAACTATCCCAGCGCTGGCCAGCCAGAATCCTGCAATCCACCCTTTC
ATACCACCAAAGCTAAGCGCCTATGTGGATGAAGCGAAGAGGTATGCTGCAGAGCACACTCTACAGACAC
TAGGCATCCCCACAGAAGGAGGGGACGCTGGGACTACAGCACCCACGGCCACTTCTGCCACTGTGTTCCC
AGGATATGCTGTCCCCAGTGCCACCGCTCCTGTGTCTACAGCCCAGCTCAAGCAAGCAGTGACACTTGGA
CAAGACTTAGCAGCATATACAACCTATGAGGTCTACCCTACTTTTGCACTGACCACCCGAGGCGATGCAT
ATGGAACCTTCTAA

Translation (587 aa):
MESNHKSGDGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDSTPPERGCEIFIGKLPRDLFED
ELIPLCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFV
GGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHP
IAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAV
EAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRNTMLQGEYTYPLSHVYDPTTTYLGAPVFYTP
QAYAAIPSLHFPATKGHLSNRALIRTPSVRGAAGVRGLGGRGYLAYTGLGRGYHVKGDKREDKLYDLLPG
MELTPMNTVSLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKVTIPALASQNPAIHPF
IPPKLSAYVDEAKRYAAEHTLQTLGIPTEGGDAGTTAPTATSATVFPGYAVPSATAPVSTAQLKQAVTLG
QDLAAYTTYEVYPTFALTTRGDAYGTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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