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Report for CCDS30187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30187.1 Public Mus musculus X Gabra3 23 108 98 CCDS HistoryNCBI Gene:14396Re-query CCDS DB by CCDS ID:30187.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055966.12 ENSMUSP00000062638.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055966.12Link to Ensembl Protein Viewer:ENSMUSP00000062638.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055966Re-query CCDS DB by Protein ID:ENSMUSP00000062638
Original member Current member NCBI NM_001357814.1 NP_001344743.1 Accepted alive Link to Nucleotide Sequence:NM_001357814.1Link to Protein Sequence:NP_001344743.1Re-query CCDS DB by Nucleotide ID:NM_001357814Re-query CCDS DB by Protein ID:NP_001344743Link to BLAST:NP_001344743.1
Original member Current member NCBI NM_001358103.1 NP_001345032.1 Accepted alive Link to Nucleotide Sequence:NM_001358103.1Link to Protein Sequence:NP_001345032.1Re-query CCDS DB by Nucleotide ID:NM_001358103Re-query CCDS DB by Protein ID:NP_001345032Link to BLAST:NP_001345032.1
Original member Current member NCBI NM_008067.4 NP_032093.3 Accepted alive Link to Nucleotide Sequence:NM_008067.4Link to Protein Sequence:NP_032093.3Re-query CCDS DB by Nucleotide ID:NM_008067Re-query CCDS DB by Protein ID:NP_032093Link to BLAST:NP_032093.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344743.1 492 P26049 492 100% 0 0
NP_001345032.1 492 P26049 492 100% 0 0
NP_032093.3 492 P26049 492 100% 0 0

Chromosomal Locations for CCDS 30187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 72434649 72434984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72445175 72445386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72451504 72451656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72459589 72459732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72476226 72476308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72501079 72501299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72511305 72511372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72540063 72540184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72552677 72552816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGATAATCACACAAATGTGGCACTTTTATGTGACCAGAGTTGTACTTCTTCTCCTGATTAGTATTCTCC
CTGGAACCACTAGCCAAGGGGAATCAAGACGACAAGAACCTGGGGACTTTGTGAAACAAGATATTGGAGG
ACTCTCTCCCAAGCATGCCCCAGATATTCCTGACGATAGTACAGATAATATCACTATCTTCACTAGAATC
TTGGATCGGCTTTTGGATGGCTATGATAACCGGCTTCGACCTGGACTTGGAGATGCAGTGACTGAAGTGA
AGACAGACATCTATGTGACCAGTTTTGGCCCTGTGTCAGACACTGATATGGAATATACTATTGATGTATT
TTTTAGACAGACATGGCATGATGAAAGACTGAAATTTGATGGACCAATGAAGATCCTTCCACTGAACAAT
CTTCTGGCTAGTAAGATATGGACTCCTGATACCTTCTTCCACAATGGTAAAAAATCAGTGGCTCACAATA
TGACCACACCCAACAAGCTGCTCAGACTGGTAGATAATGGGACCCTCCTCTATACAATGAGGTTAACAAT
ACACGCTGAATGCCCCATGCATTTGGAAGATTTCCCCATGGATGTGCATGCCTGCCCACTGAAGTTTGGA
AGCTATGCCTATACCAAAGCTGAAGTAATTTATTCTTGGACTCTTGGGAAGAACAAATCTGTGGAAGTAG
CACAGGATGGCTCACGCCTGAATCAGTATGACTTGCTTGGCCATGTTGTTGGGACAGAGATAATCCGGTC
TAGTACAGGAGAATATGTCGTCATGACAACCCACTTTCATCTGAAGAGAAAAATTGGCTACTTTGTCATC
CAGACCTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTGTCTTTCTGGCTTAATAGAGAATCTG
TCCCTGCCCGCACAGTCTTTGGTGTCACCACTGTTCTCACCATGACCACCTTGAGTATCAGTGCCAGAAA
CTCTTTACCTAAAGTGGCATACGCGACGGCCATGGACTGGTTCATAGCCGTCTGTTATGCCTTTGTATTT
TCTGCACTGATTGAATTTGCTACTGTCAACTACTTCACCAAGCGGAGTTGGGCTTGGGAAGGCAAGAAGG
TACCAGAGGCCCTGGAGATGAAGAAGAAAACACCAGCAGCTCCAACAAAGAAAAACACCACCTTCAACAT
AGTGGGTACCACCTATCCTATCAATCTGGCCAAGGATACTGAGTTCTCCACCATCTCCAAGTCTGCTGCT
GCTCCCAGTGCTTCTTCAACTCCAACAGCGATTGCTTCACCCAAGGCTACTTATGTGCAAGACAGTCCTG
CTGAGACCAAGACCTACAACAGTGTCAGCAAGGTTGACAAAATTTCCCGCATCATCTTCCCTGTGCTCTT
TGCCATATTCAATCTTGTCTATTGGGCTACATATGTGAACCGGGAATCAGCTATCAAGGGCATGATCCGC
AAACAGTAG

Translation (492 aa):
MIITQMWHFYVTRVVLLLLISILPGTTSQGESRRQEPGDFVKQDIGGLSPKHAPDIPDDSTDNITIFTRI
LDRLLDGYDNRLRPGLGDAVTEVKTDIYVTSFGPVSDTDMEYTIDVFFRQTWHDERLKFDGPMKILPLNN
LLASKIWTPDTFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECPMHLEDFPMDVHACPLKFG
SYAYTKAEVIYSWTLGKNKSVEVAQDGSRLNQYDLLGHVVGTEIIRSSTGEYVVMTTHFHLKRKIGYFVI
QTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVF
SALIEFATVNYFTKRSWAWEGKKVPEALEMKKKTPAAPTKKNTTFNIVGTTYPINLAKDTEFSTISKSAA
APSASSTPTAIASPKATYVQDSPAETKTYNSVSKVDKISRIIFPVLFAIFNLVYWATYVNRESAIKGMIR
KQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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