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Report for CCDS28329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28329.1 Public Mus musculus 16 Gart 23 108 98 CCDS HistoryNCBI Gene:14450Re-query CCDS DB by CCDS ID:28329.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023684.13 ENSMUSP00000023684.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023684.13Link to Ensembl Protein Viewer:ENSMUSP00000023684.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023684Re-query CCDS DB by Protein ID:ENSMUSP00000023684
Original member Current member EBI ENSMUST00000232289.1 ENSMUSP00000156002.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232289.1Link to Ensembl Protein Viewer:ENSMUSP00000156002.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232289Re-query CCDS DB by Protein ID:ENSMUSP00000156002
Original member NCBI NM_001357351.1 NP_001344280.1 Updated not alive Link to Nucleotide Sequence:NM_001357351.1Link to Protein Sequence:NP_001344280.1Re-query CCDS DB by Nucleotide ID:NM_001357351Re-query CCDS DB by Protein ID:NP_001344280
Current member NCBI NM_001357351.2 NP_001344280.1 Accepted alive Link to Nucleotide Sequence:NM_001357351.2Link to Protein Sequence:NP_001344280.1Re-query CCDS DB by Nucleotide ID:NM_001357351Re-query CCDS DB by Protein ID:NP_001344280Link to BLAST:NP_001344280.1
Original member NCBI NM_010256.2 NP_034386.2 Updated not alive Link to Nucleotide Sequence:NM_010256.2Link to Protein Sequence:NP_034386.2Re-query CCDS DB by Nucleotide ID:NM_010256Re-query CCDS DB by Protein ID:NP_034386
Current member NCBI NM_010256.3 NP_034386.2 Accepted alive Link to Nucleotide Sequence:NM_010256.3Link to Protein Sequence:NP_034386.2Re-query CCDS DB by Nucleotide ID:NM_010256Re-query CCDS DB by Protein ID:NP_034386Link to BLAST:NP_034386.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344280.1 1010 Q64737-1 1010 100% 0 0
NP_034386.2 1010 Q64737-1 1010 100% 0 0

Chromosomal Locations for CCDS 28329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 91621557 91621748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91621847 91621962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91622893 91623034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91623371 91623501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91624327 91624464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91625314 91625520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91628027 91628179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91628422 91628673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91630043 91630241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91630606 91630715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91630977 91631071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91633875 91634106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91635994 91636162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91636507 91636592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91636992 91637079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91637930 91638055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91638727 91638795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91639340 91639451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91641212 91641386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91641594 91641689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91642957 91643101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3033 nt):
ATGGCAGCCCGAGTTCTTGTCATCGGTAGCGGGGGAAGGGAACATACCCTGGCCTGGAAGCTCGCACAGT
CTCCTCAGGTCAAGCAAGTGTTGGTTGCCCCAGGAAACGCAGGCACTGCGTGCGCTGGGAAGATCTCCAA
TGCTGCTGTCTCTGTCAATGATCACAGTGCCCTCGCTCAGTTCTGCAAGGATGAAAAGATTGAACTCGTA
GTTGTCGGACCAGAGGCCCCTCTGGCTGCAGGAATTGTTGGGGACCTGACCTCTGCAGGAGTACGATGCT
TTGGCCCCACAGCACAAGCAGCTCAATTAGAGTCCAGTAAGAAGTTTGCTAAAGAGTTTATGGACCGCCA
TGAAATCCCAACTGCACAGTGGAGAGCATTCACCAACCCTGAAGATGCCTGCAGCTTTATTACAAGCGCG
AACTTTCCTGCTTTGGTTGTGAAGGCCAGTGGCCTTGCAGCAGGGAAGGGAGTGATTGTGGCCAAGAGCC
AAGCGGAGGCCTGCAGAGCTGTACAGGAGATCATGCAAGAAAAGTCTTTCGGAGCAGCTGGTGAAACAGT
TGTTGTGGAAGAGTTTCTGGAAGGGGAAGAAGTGTCTTGCCTTTGCTTCACTGACGGGAAGACGGTGGCC
GAAATGCCCCCAGCACAAGACCATAAGCGATTGCTGGATGGAGACGAAGGCCCCAACACCGGGGGGATGG
GAGCCTACTGCCCAGCACCTCAGGTTTCTAAGGACTTGTTAGTAAAAATTAAGAACACTATTCTTCAGAG
AGCAGTAGACGGCATGCAGCAGGAGGGTGCGCCGTACACAGGAATTCTTTATGCTGGTATAATGCTGACC
AAAGATGGCCCAAAAGTGTTGGAGTTTAATTGCCGCTTTGGTGATCCGGAATGCCAGGTCATCCTCCCAC
TTCTTAAAAGTGACCTCTATGAGGTGATGCAGTCCACCTTGGATGGCCTGCTGAGCGCGTCTCTGCCTGT
TTGGCTAGAAAACCACAGTGCCGTAACCGTCGTCATGGCGAGTAAAGGGTACCCTGGAGCCTACACCAAA
GGCGTGGAGATTACAGGGTTTCCTGAGGCCCAGGCTTTAGGACTGCAGGTATTCCATGCAGGCACTGCTC
TTAAAGATGGCAAAGTAGTGACCAGCGGGGGCAGGGTCCTCACCGTGACAGCTGTCCAGGAAAATCTCAT
GTCAGCCCTTGCTGAGGCCAGGAAAGGACTCGCTGCTCTAAAGTTTGAGGGAGCCATCTATAGAAAGGAC
ATTGGCTTCCGTGCTGTGGCCTTCCTCCAGCGGCCCAGGGGCTTGACTTACAAGGACTCCGGAGTAGACA
TCGCAGCTGGAAATATGCTGGTTAAGAAAATTCAGCCTTTAGCAAAAGCCACCTCCAGACCAGGCTGCAG
TGTTGACCTTGGGGGCTTTGCTGGTCTTTTTGATTTGAAAGCAGCTGGTTTCAAAGATCCTCTTCTGGCC
TCTGGAACAGATGGTGTGGGAACTAAACTAAAGATTGCGCAGCTGTGCAATAAGCATGATTCCATCGGGC
AGGATCTGGTGGCCATGTGTGTGAACGACATCCTCGCCCAGGGAGCAGAGCCCCTCTTCTTCCTTGACTA
CTTTTCCTGTGGGAAGCTCGACCTCAGTACAACTGAAGCCGTCATTGCTGGAATTGCTGCAGCTTGCCAG
CAGGCTGGCTGTGCCCTGCTGGGTGGGGAGACAGCAGAGATGCCCAACATGTACCCTCCTGGAGAGTATG
ATCTTGCTGGGTTTGCTGTTGGTGCTATGGAGAGACACCAGAAGCTCCCTCAGCTAGAAAGGATCACCGA
AGGGGATGCTGTTATTGGAGTGGCTTCATCTGGTCTTCACAGCAATGGGTTTAGCCTTGTGAGGAAAATC
GTGGAGAGGTCTTCGCTCCAATACTCCTCCCCAGCACCTGGTGGTTGTGGAGATCAGACCTTAGGGGACT
TACTTCTAACTCCAACCAGGATCTACAGCCATTCACTGCTGCCCATCATACGTTCAGGACGTGTCAAAGC
TTTTGCTCATATCACTGGAGGCGGGTTGCTGGAAAACATCCCCAGAGTCCTCCCTCAGAAGTTTGGAGTA
GATTTAGATGCCAGCACCTGGAGGGTCCCCAAGGTCTTCTCGTGGCTACAGCAGGAAGGAGAGCTCTCTG
AAGAAGAAATGGCCAGGACATTCAACTGTGGGATTGGAGCTGCCCTGGTGGTGTCAAAGGACCAGGCCGA
GCAGGTTCTGCATGACGTTCGGCGGCGGCAGGAGGAAGCCTGGGTGATAGGCAGTGTCGTTGCGTGTCCT
GAAGATTCCCCTCGTGTCAGAGTTAAGAATCTGATTGAAACCATACAAACGAATGGGTCATTGGTGGCAA
ATGGCTTCCTGAAAAGTAATTTCCCTGTGCAACAAAAGAAGGCAAGAGTGGCTGTCTTGATATCTGGAAC
AGGGTCGAACCTCCAGGCGCTCATAGATAGCACCCGGGATCCCAAGAGCTCCTCACATATTGTTCTTGTC
ATCTCCAACAAAGCCGCCGTAGCCGGCTTAGACCGAGCTGAGCGAGCTGGTATTCCCACCAGGGTAATTA
ATCACAAATTATATAAAAATCGTGTTGAGTTTGACAATGCAGTTGACCACGTCCTGGAAGAGTTCTCTGT
AGACATCGTCTGTCTTGCAGGGTTCATGAGGATCCTCTCTGGGCCCTTCGTCAGAAAATGGGACGGGAAA
ATGCTCAACATCCACCCATCCTTGCTCCCTTCCTTTAAGGGTTCAAATGCCCACGAGCAAGTCCTGGAAG
CTGGAGTCACAATCACTGGGTGTACCGTACACTTTGTCGCTGAAGATGTAGATGCCGGACAAATCATCCT
GCAGGAAGCTGTCCCTGTGCGGAGGGGTGACACTGTGGCAACGCTGTCTGAACGGGTCAAAGTGGCAGAA
CATAAGATCTTTCCTGCCGCTCTTCAGCTGGTGGCCAGCGGGGCTGTGCAGCTGCGAGAAGATGGCAAGA
TCCACTGGGCCAAGGAGCAGTGA

Translation (1010 aa):
MAARVLVIGSGGREHTLAWKLAQSPQVKQVLVAPGNAGTACAGKISNAAVSVNDHSALAQFCKDEKIELV
VVGPEAPLAAGIVGDLTSAGVRCFGPTAQAAQLESSKKFAKEFMDRHEIPTAQWRAFTNPEDACSFITSA
NFPALVVKASGLAAGKGVIVAKSQAEACRAVQEIMQEKSFGAAGETVVVEEFLEGEEVSCLCFTDGKTVA
EMPPAQDHKRLLDGDEGPNTGGMGAYCPAPQVSKDLLVKIKNTILQRAVDGMQQEGAPYTGILYAGIMLT
KDGPKVLEFNCRFGDPECQVILPLLKSDLYEVMQSTLDGLLSASLPVWLENHSAVTVVMASKGYPGAYTK
GVEITGFPEAQALGLQVFHAGTALKDGKVVTSGGRVLTVTAVQENLMSALAEARKGLAALKFEGAIYRKD
IGFRAVAFLQRPRGLTYKDSGVDIAAGNMLVKKIQPLAKATSRPGCSVDLGGFAGLFDLKAAGFKDPLLA
SGTDGVGTKLKIAQLCNKHDSIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSTTEAVIAGIAAACQ
QAGCALLGGETAEMPNMYPPGEYDLAGFAVGAMERHQKLPQLERITEGDAVIGVASSGLHSNGFSLVRKI
VERSSLQYSSPAPGGCGDQTLGDLLLTPTRIYSHSLLPIIRSGRVKAFAHITGGGLLENIPRVLPQKFGV
DLDASTWRVPKVFSWLQQEGELSEEEMARTFNCGIGAALVVSKDQAEQVLHDVRRRQEEAWVIGSVVACP
EDSPRVRVKNLIETIQTNGSLVANGFLKSNFPVQQKKARVAVLISGTGSNLQALIDSTRDPKSSSHIVLV
ISNKAAVAGLDRAERAGIPTRVINHKLYKNRVEFDNAVDHVLEEFSVDIVCLAGFMRILSGPFVRKWDGK
MLNIHPSLLPSFKGSNAHEQVLEAGVTITGCTVHFVAEDVDAGQIILQEAVPVRRGDTVATLSERVKVAE
HKIFPAALQLVASGAVQLREDGKIHWAKEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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