NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19698.1 Public Mus musculus 5 Nipsnap2 23 108 98 CCDS HistoryNCBI Gene:14467Re-query CCDS DB by CCDS ID:19698.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19698.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086046.9 ENSMUSP00000083211.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086046.9Link to Ensembl Protein Viewer:ENSMUSP00000083211.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086046Re-query CCDS DB by Protein ID:ENSMUSP00000083211
Original member Current member EBI ENSMUST00000124342.7 ENSMUSP00000117705.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124342.7Link to Ensembl Protein Viewer:ENSMUSP00000117705.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124342Re-query CCDS DB by Protein ID:ENSMUSP00000117705
Original member Current member EBI ENSMUST00000186265.5 ENSMUSP00000141131.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186265.5Link to Ensembl Protein Viewer:ENSMUSP00000141131.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186265Re-query CCDS DB by Protein ID:ENSMUSP00000141131
Original member NCBI NM_008095.4 NP_032121.3 Updated not alive Link to Nucleotide Sequence:NM_008095.4Link to Protein Sequence:NP_032121.3Re-query CCDS DB by Nucleotide ID:NM_008095Re-query CCDS DB by Protein ID:NP_032121
Current member NCBI NM_008095.5 NP_032121.3 Accepted alive Link to Nucleotide Sequence:NM_008095.5Link to Protein Sequence:NP_032121.3Re-query CCDS DB by Nucleotide ID:NM_008095Re-query CCDS DB by Protein ID:NP_032121Link to BLAST:NP_032121.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032121.3 281 O55126 281 98.5765% 0 4

Chromosomal Locations for CCDS 19698.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129725145 129725221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129739472 129739611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129739718 129739763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129744705 129744799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129745216 129745286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129746327 129746467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129748002 129748033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129753226 129753320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129754842 129754925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129757079 129757143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGCGGCGCGGGTGTTGCTCGCGCGAGGAGGCCTGCTGCGGCCAGCCGCCCAGAGCGGCTTCCTGCCGG
GGCTCCGGACAGTGACATCCTCAAGTCACCGAGCTCGGGAAGACAGCTGGCTAAAGTCCTTGTTTGTCAG
AAAGGTCGATCCAAGGAAAGATGCCCACTCCAACCTCCTAGCCAAAAAGGAGACGAGCAGTCTGTACAAG
TTACAGTTTCACAACGTTAAGCCGGAATGCCTAGACGCATACAACAAAATTTGTCAAGAAGTGTTACCAA
AGATCCACGAAGGCAAGCAGTACCCTTGTACCCTGGTGGGGACGTGGAACACGTGGTATGGCGAGCAGGA
TCAAGCAGTCCACCTCTGGAGGTATGAAGGAGGCTATCCAGCCCTCACGGAGGTCATGAATAAACTCAAA
GAAAACCAGGAATTTGTAAATTTCCGAAAGGCCAGAAGTGACATGCTTCTCTCCAGGAAGAACCAGCTGC
TGCTGGAGTTCAGTTTCTGGAATGAGCCAGTGCCAAGACCGGGCCCCAATATATACGAACTCAGGTCCTA
CCAACTCCGACCAGGAACAATGATCGAGTGGGGCAACTACTGGGCCCGGGCCATTCGCTTTAGACAGGAC
AGTAATGAGGCAGTTGGGGGATTCTTCTCTCAAATTGGGCAGCTCTATATGGTGCACCATCTTTGGGCTT
ATAAAGATCTTCAGACCCGGGAGGACATCCGGAACGCGGCCTGGCACAAGCATGGCTGGGAGGAGCTCGT
GTACTATACAGTCCCACTCATTCAGGAAATGGAGTCCAGGATCATGATCCCGCTCAAGACCTCCCCGCTC
CAGTGA

Translation (281 aa):
MAARVLLARGGLLRPAAQSGFLPGLRTVTSSSHRAREDSWLKSLFVRKVDPRKDAHSNLLAKKETSSLYK
LQFHNVKPECLDAYNKICQEVLPKIHEGKQYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEVMNKLK
ENQEFVNFRKARSDMLLSRKNQLLLEFSFWNEPVPRPGPNIYELRSYQLRPGTMIEWGNYWARAIRFRQD
SNEAVGGFFSQIGQLYMVHHLWAYKDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPLKTSPL
Q


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH