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Report for CCDS52825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52825.1 Public Mus musculus 9 Tle3 23 108 98 CCDS HistoryNCBI Gene:21887Re-query CCDS DB by CCDS ID:52825.1Re-query CCDS DB by GeneID:21887See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52825.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162973.7 ENSMUSP00000124173.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162973.7Link to Ensembl Protein Viewer:ENSMUSP00000124173.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162973Re-query CCDS DB by Protein ID:ENSMUSP00000124173
Original member Current member NCBI NM_009389.2 NP_033415.2 Accepted alive Link to Nucleotide Sequence:NM_009389.2Link to Protein Sequence:NP_033415.2Re-query CCDS DB by Nucleotide ID:NM_009389Re-query CCDS DB by Protein ID:NP_033415Link to BLAST:NP_033415.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033415.2 772 Q08122-3 772 100% 0 0

Chromosomal Locations for CCDS 52825.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 61373438 61373461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61373953 61374053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61374515 61374578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61375529 61375573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61393203 61393265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61394608 61394682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61401853 61402057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61403452 61403468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61407354 61407473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61408280 61408330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61408766 61408918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61409275 61409416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61409936 61410135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61411263 61411339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61412265 61412514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61412855 61413102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61413943 61414090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61414711 61414861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61415562 61415638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 61416609 61416716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGTATCCGCAAGGCAGACATCCGGCACCCCATCAACCCGGGCAGCCGGGATTTAAATTCACTGTGGCCG
AGTCCTGTGACAGGATCAAAGACGAATTCCAGTTCCTGCAAGCTCAGTATCACAGCCTCAAAGTGGAGTA
TGACAAGCTGGCTAACGAGAAGACGGAGATGCAGCGCCATTATGTGATGTACTATGAGATGTCCTATGGC
TTGAATATTGAAATGCACAAGCAGACAGAGATTGCGAAGAGACTGAACACAATCCTAGCCCAGATCATGC
CTTTTTTGTCACAGGAGCATCAGCAGCAAGTGGCGCAGGCTGTGGAACGCGCCAAGCAGGTCACCATGAC
GGAGTTGAACGCCATCATCGGGCAGCAGCAACTCCAGGCCCAGCACCTCTCCCATGCCACGCATGGTCCC
CCGGTCCAGCTGCCACCCCACCCGTCAGGCCTCCAGCCTCCTGGGATTCCCCCAGTGACAGGAAGCAGCT
CTGGGTTGCTGGCACTTGGTGCCCTGGGAAGTCAAGCTCACTTGGCGGTGAAGGATGAGAAGAACCACCA
TGAACTGGATCACAGAGAGAGAGAGTCCAGCACGAACAATTCCGTGTCACCCTCTGAAAGCCTCCGGGCC
AGTGAGAAGCACCGGGGCTCTGCAGACTACAGCATGGAAGCCAAGAAGCGGAAGGCGGAAGAGAAAGACA
GCCTCAGCAGATACGATAGCGATGGGGACAAGAGTGACGACCTGGTGGTGGATGTCTCTAATGAGGACCC
AGCAACACCCCGGGTGAGCCCAGCACACTCCCCTCCTGAAAATGGGCTGGACAAAGCCCGTGGTCTGAAG
AAAGATGCCCCCACCAGCCCAGCCTCCGTGGCTTCCTCCAGCAGCACACCTTCCTCCAAGACCAAAGACC
TTGGTCATAATGACAAATCTTCCACACCTGGGCTCAAGTCCAACACACCAACGCCAAGAAATGATGCCCC
AACTCCAGGCACCAGCACCACCCCGGGGCTCCGGTCAATGCCGGGCAAACCTCCAGGCATGGACCCGATA
GGTATAATGGCCTCGGCCCTGCGAACACCCATCACCCTCACCAGCTCCTATCCAGCACCCTTTGCCATGA
TGAGCCACCACGAGATGAATGGCTCCCTCACCAGCCCAAGCGCCTATGCTGGCCTACACAACATCCCATC
CCAGATGAGCGCCGCCGCAGCCGCTGCAGCCGCCGCCTATGGCCGATCGCCAATGGTGAGCTTTGGAGCT
GTTGGTTTTGACCCTCACCCCCCAATGAGGGCCACAGGCCTGCCTTCCAGTCTCGCCTCCATTCCTGGAG
GGAAACCGGCATACTCCTTCCATGTGAGTGCTGATGGGCAGATGCAACCTGTGCCCTTCCCCCATGATGC
ACTAGCAGGCCCTGGCATTCCCAGGCATGCCCGGCAGATCAATACGCTCAGCCATGGAGAGGTGGTATGT
GCTGTGACCATCAGCAACCCCACACGACACGTCTACACAGGCGGCAAGGGCTGTGTGAAGATATGGGACA
TCAGCCAGCCGGGCAGCAAGAGTCCCATCTCCCAGCTGGACTGCCTGAACAGGGACAACTACATCCGCTC
GTGCAAGCTTCTCCCCGATGGGCGCACGCTCATTGTGGGTGGTGAGGCCAGCACGCTCACCATCTGGGAC
CTGGCCTCACCCACACCCCGCATCAAGGCTGAGCTGACGTCCTCGGCTCCAGCCTGTTATGCCCTGGCCA
TCAGTCCTGATGCCAAAGTCTGTTTTTCCTGCTGCAGCGACGGGAACATTGCGGTTTGGGATCTGCACAA
CCAGACCCTGGTCAGGCAGTTCCAGGGCCACACAGATGGGGCCAGCTGTATAGACATCTCTCATGATGGC
ACTAAGCTGTGGACCGGGGGCCTGGACAACACCGTGCGCTCCTGGGACCTACGTGAAGGACGGCAGTTAC
AGCAACACGATTTCACCTCCCAGATCTTCTCCCTGGGTTACTGCCCCACTGGGGAGTGGCTGGCCGTGGG
CATGGAGAGCAGCAATGTGGAGGTCCTGCACCACACTAAGCCCGACAAATACCAGCTGCACCTGCACGAG
AGCTGCGTGCTGTCCCTCAAGTTCGCCTATTGTGGCAAGTGGTTTGTGAGCACTGGGAAAGACAACCTTC
TCAATGCCTGGAGGACGCCTTATGGAGCCAGCATCTTCCAGTCAAAAGAATCCTCATCTGTCTTGAGCTG
TGACATTTCAGCGGATGACAAATATATTGTAACAGGCTCTGGTGACAAGAAGGCCACAGTTTACGAGGTC
ATCTACTGA

Translation (772 aa):
MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYG
LNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGP
PVQLPPHPSGLQPPGIPPVTGSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRA
SEKHRGSADYSMEAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLK
KDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRSMPGKPPGMDPI
GIMASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYAGLHNIPSQMSAAAAAAAAAYGRSPMVSFGA
VGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRHARQINTLSHGEVVC
AVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
LASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDG
TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHE
SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEV
IY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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