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Report for CCDS52986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52986.1 Public Mus musculus X Slc35a2 23 108 98 CCDS HistoryNCBI Gene:22232Re-query CCDS DB by CCDS ID:52986.1Re-query CCDS DB by GeneID:22232See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115663.9 ENSMUSP00000111327.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115663.9Link to Ensembl Protein Viewer:ENSMUSP00000111327.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115663Re-query CCDS DB by Protein ID:ENSMUSP00000111327
Original member NCBI NM_078484.2 NP_511039.2 Updated not alive Link to Nucleotide Sequence:NM_078484.2Link to Protein Sequence:NP_511039.2Re-query CCDS DB by Nucleotide ID:NM_078484Re-query CCDS DB by Protein ID:NP_511039
Current member NCBI NM_078484.3 NP_511039.2 Accepted alive Link to Nucleotide Sequence:NM_078484.3Link to Protein Sequence:NP_511039.2Re-query CCDS DB by Nucleotide ID:NM_078484Re-query CCDS DB by Protein ID:NP_511039Link to BLAST:NP_511039.2

Chromosomal Locations for CCDS 52986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7884343 7884433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7885749 7885931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7889612 7889763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7892140 7892867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7894191 7894218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCAGCGGTTGGGGTTGGTGGATCTACCGCTGCGGCCGGGGCTGGGGCTGTGTCCTCGGGCGCGTTGG
AACCTGGGTCCACTACAGCGGCTCACCGGCGCCTCAAGTATATATCCTTAGCTGTGCTGGTGGTCCAGAA
TGCCTCCCTCATCCTCAGCATCCGCTACGCTCGCACACTGCCTGGGGACCGCTTCTTTGCCACCACTGCT
GTGGTCATGGCTGAAGTGCTCAAAGGTCTCACCTGTCTCCTGCTGCTCTTCGCACAAAAGAGGGGTAATG
TGAAGCACCTGGTCCTCTTCCTCCATGAGGCTGTCCTGGTCCAATATGTGGACACACTCAAGCTTGCGGT
GCCCTCTCTCATCTATACCTTGCAGAATAACCTCCAGTATGTTGCCATCAGCAACCTGCCAGCTGCCACT
TTCCAGGTGACATATCAGCTGAAGATCCTGACTACAGCGCTCTTCTCTGTGCTCATGTTGAATCGCAGCC
TCTCACGCCTGCAGTGGGCCTCTCTGCTGCTGCTCTTCACTGGTGTCGCCATTGTCCAGGCACAGCAAGC
TGGTGGGAGTGGCCCACGGCCACTGGATCAGAACCCGGGGGCGGGCTTAGCGGCAGTTGTGGCCTCCTGT
CTCTCCTCAGGCTTCGCTGGGGTCTACTTTGAGAAGATCCTCAAAGGCAGCTCAGGTTCTGTGTGGCTTC
GTAACCTACAGCTCGGCCTCTTTGGCACAGCGCTGGGCCTGGTGGGGCTCTGGTGGGCTGAGGGCACCGC
CGTGGCCAGTCAAGGCTTCTTCTTTGGGTACACACCTGCTGTCTGGGGTGTAGTACTAAACCAAGCCTTT
GGTGGGCTTCTGGTGGCTGTTGTTGTCAAGTATGCTGACAACATCCTCAAGGGCTTTGCCACCTCCCTGT
CTATTGTGCTGTCCACTGTTGCCTCCATTCGCCTCTTTGGCTTCCACCTGGACCCATTATTTGCCCTGGG
CGCTGGGCTCGTCATTGGTGCTGTCTACCTCTACAGCCTTCCCCGAGGTGCAGTCAAAGCCATAGCCTCG
GCCTCGGCCTCTGGGCCCTGCATTCACCAGCAGCCTCCTGGGCAGCCACCACCACCGCAGCTGTCTTCTC
GAGGAGACCTCACCACGGAGCCCTTTCTGCCAAAGTTGCTCACCAAGGTGAAGGGGTCGTAG

Translation (393 aa):
MAAVGVGGSTAAAGAGAVSSGALEPGSTTAAHRRLKYISLAVLVVQNASLILSIRYARTLPGDRFFATTA
VVMAEVLKGLTCLLLLFAQKRGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAAT
FQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLFTGVAIVQAQQAGGSGPRPLDQNPGAGLAAVVASC
LSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVASQGFFFGYTPAVWGVVLNQAF
GGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHLDPLFALGAGLVIGAVYLYSLPRGAVKAIAS
ASASGPCIHQQPPGQPPPPQLSSRGDLTTEPFLPKLLTKVKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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