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Report for CCDS50276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50276.1 Public Mus musculus 18 Mcc 23 108 98 CCDS HistoryNCBI Gene:328949Re-query CCDS DB by CCDS ID:50276.1Re-query CCDS DB by GeneID:328949See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164666.5 ENSMUSP00000128032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164666.5Link to Ensembl Protein Viewer:ENSMUSP00000128032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164666Re-query CCDS DB by Protein ID:ENSMUSP00000128032
Original member Current member NCBI NM_001085374.1 NP_001078843.1 Accepted alive Link to Nucleotide Sequence:NM_001085374.1Link to Protein Sequence:NP_001078843.1Re-query CCDS DB by Nucleotide ID:NM_001085374Re-query CCDS DB by Protein ID:NP_001078843Link to BLAST:NP_001078843.1

Chromosomal Locations for CCDS 50276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44429887 44430067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44431336 44431458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44442912 44443009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44445730 44445936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44449205 44449439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44459799 44459982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44463838 44463941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44468381 44468521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44473624 44473772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44475134 44475223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44476232 44476378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44491124 44491330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44493382 44493545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44510097 44510239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44519517 44519659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44534187 44534300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44661698 44661754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGAATTCTGGAGTTGCGGTGAAATATGGCAACGACTCCTCAGCCGAGCTGAGCGAGCTCCACTTGGCAG
CCCTGGCATCACTCAAGGGAGACATTGTAGAGCTGAATAAGCGTCTGCAGCAGACAGAGCGGGAACGCGA
CCTCCTGGAAAAGAAGTTGGCCAAAGCACAGTGTGAGCAGTCACACCTCATGAGAGAGCATGAAGACGTC
CAGGAGCGCACGACACTCCGCTATGAGGAGCGCATCACAGAACTCCACAGTATCATTGCAGAACTCAACA
AGAAGATAGACCGCCTGCAAGGTACCACCATCAGGGAGGAAGATGAGTACTCAGAACTTCGGTCAGAGCT
CAGCCAGAGTCAACAAGAGGTTAATGAAGACTCCAGAAGTGTGGACCAAGACCAGACCTCTGTGTCCATC
CCTGAGAACCAGTCTACTATGGTCACTGCTGATATGGATAACTGCAGTGACTTGAACTCAGAACTGCAGA
GGGTGTTGACCGGTCTGGAGAGTGTCGTCTGCGGCAGGAAGAAGAGCAGCTGTAGCCTCTCTGTGGCCGA
CGTTGACAGGCACATAGAGCAGCTCACCACGGCCAGCGAGCACTGCGACTTGGCCATTAAGACAGTTGAG
GAGATCGAGGGCGTTCTAGGTCGCGATCTGTATCCCAACCTGGCTGAGGAGCGGTCCCGGTGGGAGAAAG
AGCTGGCTGGACTGCGGGAAGAGAACGAAAGCCTGACGGCCATGCTATGCAGCAAAGAGGAGGAGCTGAA
CCGGACCAAGGCCACTATGAACGCCATCCGTGAGGAGCGGGACAGGCTTCGGAGGCGGGTCCGAGAGCTC
CAAACTCGGCTGCAGAGTGTGCAGGCTACTGGACCTTCTAGCCCAGGTCGCCTCACCCCTGCCAATCGCC
CAATCAACCCCAGCACCGGAGAGCTAAGCACCAGCAGTAGCAGCAATGACATCCCCATCGCTAAGATTGC
TGAGAGAGTGAAGCTGTCAAAGACGAGATCTGAATCGTCATCATCTGATAGGCCAGTCCTGGGCTCGGAA
ATCAGTAGCATCGGGGTTTCCAGCAGTGTGGCAGAACACCTGGCCCACTCACTCCAGGACTGCTCCAACA
TCCAGGAAATTTTCCAGACACTCTACTCACACGGATCTGCCATCTCTGAAAGCAAGATTAGAGAGTTTGA
GGTGGAAACGGAACGATTGAATAGTCGTATTGAACACCTCAAATCCCAAAATGACCTTCTCACCATAACC
CTGGAGGAATGTAAAAGCAACGCCGAGAGGATGAGCATGCTGGTGGGGAAGTACGAATCCAACGCCACAG
CCCTGAGGCTGGCCTTGCAGTACAGTGAGCAGTGCATAGAAGCCTATGAACTCCTGCTGGCCCTGGCTGA
GAGCGAGCAGAGCCTCATCCTGGGGCAATTCCGAGCAGCTGGTGTGGGCTCCTCCCCTGGAGACCAGTCA
GGGGATGAAAATATCACTCAGATGCTCAAGCGGGCTCATGACTGCCGGAAGACTGCTGAGAACGCCGCCA
AAGCCCTGCTCATGAAGCTGGATGGCAGCTGCGGGGGAGCCTTCGCCGTGGCTGGCTGCAGCGTGCAGCC
CTGGGAGAGCCTGTCCTCCAACAGCCATACCAGCACGACCAGCTCTACAGCCAGCAGCTGTGACACAGAG
TTCACTAAGGAAGATGAGCAAAGGTTGAAGGATTATATCCAGCAGCTCAAGAATGACAGAGCCGCCGTCA
AGCTGACCATGCTGGAGCTGGAGAGCATCCACATCGATCCACTCAGCTATGATGTCAAGCCAAGAGGCGA
CAGCCAGAGGCTGGACCTGGAAAATGCCGTGCTGATGCAGGAGCTGATGGCCATGAAGGAGGAGATGGCT
GAGCTGAAGGCCCAGCTCTATCTACTGGAGAAGGAGAAGAAAGCCCTGGAGCTGAAGCTGAGCACGAGGG
AGGCGCAGGAGCAGGCCTATCTGGTGCACATCGAGCATCTCAAGTCCGAGGTGGAGGAGCAGAAGGAGCA
GAGGACGCGGTCTCTGAGCTCCACCAGCAGCAGCGGCAAGGAGAAGCCTGGCAAGGAGTGTGCCGATGCT
GCCTCTCCAGCTTTGTCACTTGCCGAACTAAGGACGAACAGCGACAGTGAGCTGGCCACCGAGTTCGCCA
ATGCCATCCGACGGGAAAAGAAGCTGAAGGCCAGAGTCCAAGAACTGGTCAGTGCCTTGGAAAGACTAAC
CAAAAGCAGTGAAATCAGACACCAGCAGTCAGCAGAGTTTGTTAATGACCTGAAACGGGCCAACAGCAAT
CTGGTGGCTGCTTACGAGAAAGCAAAGAAGAAGCATCAAAACAAGCTGAAGAAGCTGGAATCTCAGATGA
TGGCCATGGTGGAGCGACACGAGACCCAAGTGAGAATGCTCAAGCAAAGAATAGCCCTGCTGGAGGAAGA
GAATTCCAGGCCACACACCAACGAAACGTCACTCTAA

Translation (828 aa):
MNSGVAVKYGNDSSAELSELHLAALASLKGDIVELNKRLQQTERERDLLEKKLAKAQCEQSHLMREHEDV
QERTTLRYEERITELHSIIAELNKKIDRLQGTTIREEDEYSELRSELSQSQQEVNEDSRSVDQDQTSVSI
PENQSTMVTADMDNCSDLNSELQRVLTGLESVVCGRKKSSCSLSVADVDRHIEQLTTASEHCDLAIKTVE
EIEGVLGRDLYPNLAEERSRWEKELAGLREENESLTAMLCSKEEELNRTKATMNAIREERDRLRRRVREL
QTRLQSVQATGPSSPGRLTPANRPINPSTGELSTSSSSNDIPIAKIAERVKLSKTRSESSSSDRPVLGSE
ISSIGVSSSVAEHLAHSLQDCSNIQEIFQTLYSHGSAISESKIREFEVETERLNSRIEHLKSQNDLLTIT
LEECKSNAERMSMLVGKYESNATALRLALQYSEQCIEAYELLLALAESEQSLILGQFRAAGVGSSPGDQS
GDENITQMLKRAHDCRKTAENAAKALLMKLDGSCGGAFAVAGCSVQPWESLSSNSHTSTTSSTASSCDTE
FTKEDEQRLKDYIQQLKNDRAAVKLTMLELESIHIDPLSYDVKPRGDSQRLDLENAVLMQELMAMKEEMA
ELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHLKSEVEEQKEQRTRSLSSTSSSGKEKPGKECADA
ASPALSLAELRTNSDSELATEFANAIRREKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSN
LVAAYEKAKKKHQNKLKKLESQMMAMVERHETQVRMLKQRIALLEEENSRPHTNETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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