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Report for CCDS48703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48703.1 Public Mus musculus 10 Lemd3 23 108 98 CCDS HistoryNCBI Gene:380664Re-query CCDS DB by CCDS ID:48703.1Re-query CCDS DB by GeneID:380664See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119944.7 ENSMUSP00000113103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119944.7Link to Ensembl Protein Viewer:ENSMUSP00000113103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119944Re-query CCDS DB by Protein ID:ENSMUSP00000113103
Original member Current member NCBI NM_001081193.2 NP_001074662.2 Accepted alive Link to Nucleotide Sequence:NM_001081193.2Link to Protein Sequence:NP_001074662.2Re-query CCDS DB by Nucleotide ID:NM_001081193Re-query CCDS DB by Protein ID:NP_001074662Link to BLAST:NP_001074662.2

Chromosomal Locations for CCDS 48703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 120925393 120925556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120925767 120925845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120925935 120926040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120927946 120928027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120931042 120931220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120931721 120931823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120931928 120932029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120933395 120933540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120933630 120933709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120947204 120947271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120949297 120949363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120952218 120952255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120977784 120979326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2757 nt):
ATGGCGGCGGCGACGGCGGCGGCGGCGCCTCAGCAGCTCTCGGATGAGGAGCTTTTCTCTCAGCTCCGCC
GTTACGGCTTATCTCCGGGTCCCGTGACGGAGAGCACCCGGCCCGTCTACCTCAAGAAGCTGAAGAAGCT
TCGCGAGGAAGAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCACCGGGCGGGGGGCCGCGGCAAC
AAGACGCGGAACAGTAATAACAATAACACGGCGACGGCGATGGGGGGCCGGCCGGGCTCCGGGGACCTCG
CGTACTTACGGAGCCCCGCGGGCCTCGGCCGCCTGTCGGCCTCGGCTGCCGAGAGCCCCGTGGCAGGAGG
CTCCGGGGGCGCGGCGGCCGTCCCCGCGGCGGGCAGCAAAGTGCTGCTGGGCTTCAGCTCGGACGAGTCG
GACGTGGAGGCCAGCCCGCGGGAGCAGGCGGGCGGCGGCGGCGCGCGGAGGGACCGGGCTGCGCTCCAGT
ACCGCGGGCTCAGAGCCCCACCGGCGCCCCCGGCCGCGGGCGAGGTGACGGGCGGCCACCCGGGCGAGCG
GAGGAAGCCGCACTCGTGGTGGGGGGCGCGGAGGCCGGCGGGCCCCGAGCCGCAGCCCCCGGCGGCGGGG
AGCGACGGGGCCGCGGAGGACGCGGACGAGGAGCTGGCGGACGGTGAGGACCGCGACCCCGAGGCCGAGG
AGCCGCTGTGGGCCAGCCGAACGGTGAACGGCAGCCGGCTTCTCCCCTACAGCAGCTGCCGGGAGCACTA
CTCGGACTCGGAGGAGGAGGAGGAGGAGGGGGAGGAGGACGGCGACGTGGCCCCGGCCAGACAGGTATTA
AAGGACGACTCCCTCGCCCGGCATCGACCCAGACGGAGCCATAGTAAGCCGTTCTCGGCGCTGACTGCTA
AATCTGGCGGCAGCCGGCAGGAGACTTCGGTTCAGGGAGGGGGAGCACTCGCGATGAATGACAGGGCGGC
GGCCGCGGGGAGTCTAGACAGGAGCCGAAACCTCGAGGAGGCGGCGGCCGAGCCGGGAGGAGGAGGAGGA
GGAGGGTGCGGGTGCGATCCAGTGGACTCCATTCCTCGATACCGTGCCGGCGCGAAGAAGCTGGCCCCGC
TGCTGTCGCCTCCGAGTCCCGATGGGGACTCCACCTTGGAGTCGCCCACGGGGCCCCTCCTCAAAACCAA
TAATCACATAGGCGGCGGGGCCTTCGGCGTGGATTCCCCCGGTCTGTATGCCAACAGCCTCCCTCCCGGG
GCCACCGCCGCGGCCGCCCCTGGCACACTCAGGATCAACCACGCCAACCATACTGGCTCCAATCACACCT
ACCTGAAAACCGCCTACGGCAAGCCGAAGCTCTGCGAGCCCGAAGAGGAACTTCTCCAGCAGTTTAAACG
GGAGGAGGTGTCCCCGACGGGGAGTTTCAGCGCTCACTACTTGTCGATGTTCCTCCTAACCGCTGCCTGC
TTGTTTTTCCTAATACTGGGACTGACTTACCTAGGAATGAGAGGGACGGGAGTACCCGAGGACGGAGGAC
TCATAAAAAACCCCTTTGATGAAACATTTGGAAAAATACAAGAAAGTGAAAAAAATCTTTTGATGAGCAC
ATTGTACAAACTTCATGATCGATTGGCCCAGATTGCAGGAGACCATGAATGTGGCAGTTCTAGTCAAAGG
ATGCTTTCTGTCCAAGAAGCAGCTGCATATTTAAAAAATTTAGGTCCTGAGTATGAAGATGTATTTAATA
CTTCATTGCTGTGGATTTTTAAAAATGGGAAAGATGTTGGAATAAGGTGTGTTGGTTACGGGCCTGAGGA
AGACTTGACAAACATAACTGATGTGCAGTTTTTACAGTCCACCAGGCCCCAGATGCCCTTCTGGTGCCGT
TTCCGGCGTGCTTTCATTACTGTGACCCATAGGTTATTGTTGTTATGTTTAGGTGTAGTGCTGGTGTGCG
TTGCTCTCCGGTACATGAGATACCGCTGGACTAAGGAGGAGGAGGAGACGAGGCAGATGTATGACATGGT
GGTAAAGATTATAGATGTTTTGCGAAGTCATAATGAAGCTTGCCAGGAGACTAAAGACTTACAGCCTTAC
ATGCCTCTTCCACATGTCCGCGATTCCCTAATACAGCCGCAGGACAGGAAAAAGATGAAGAAAGTCTGGG
ATAGAGCTGTTGACTTCCTTGCTGCTAACGAATCTAGAGTCCGTACGGAGACTCGAAGAGTAGGCGGTGC
AGACTTTCTAGTCTGGCGGTGGATCCAGCCCTCTGCGTCTTGTGACAAGACATTAGTTATACCCTCTAAA
GTATGGCAAGGTCAAGCATTTCATTTAGATAGAAGAAATTCACCACCAAATAGTTTGACTCCATGTTTAA
AGATTCGAAATATGTTTGACCCGGTTATGGAAATAGGAGATCACTGGCACCTGGCGATCCAAGAAGCGAT
TTTAGAGAAGTGCAGTGACAATGACGGCATCGTTCATATTGCCGTAGACAGGAACTCGCGGGAGGGCTGT
GTCTATGTTAAATGTTTGTCTCCGGAATATGCTGGGAAGGCTTTTAAAGCATTGCATGGCTCTTGGTTTG
ATGGAAAATTGGTTACAGTAAAATACTTACGACTAGATAGATACCACCATCGCTTTCCCCAGGCCCTCAC
TTGCAACACTCCCTTGAAGCCAGCAAATAAACATATGAACTCTCTGTCTCACCTGCGCCTGCGGACTGGC
CTAGCTAATTCTCAAGGAAGTTCCTGA

Translation (918 aa):
MAAATAAAAPQQLSDEELFSQLRRYGLSPGPVTESTRPVYLKKLKKLREEEQQQQQQQQQQQHRAGGRGN
KTRNSNNNNTATAMGGRPGSGDLAYLRSPAGLGRLSASAAESPVAGGSGGAAAVPAAGSKVLLGFSSDES
DVEASPREQAGGGGARRDRAALQYRGLRAPPAPPAAGEVTGGHPGERRKPHSWWGARRPAGPEPQPPAAG
SDGAAEDADEELADGEDRDPEAEEPLWASRTVNGSRLLPYSSCREHYSDSEEEEEEGEEDGDVAPARQVL
KDDSLARHRPRRSHSKPFSALTAKSGGSRQETSVQGGGALAMNDRAAAAGSLDRSRNLEEAAAEPGGGGG
GGCGCDPVDSIPRYRAGAKKLAPLLSPPSPDGDSTLESPTGPLLKTNNHIGGGAFGVDSPGLYANSLPPG
ATAAAAPGTLRINHANHTGSNHTYLKTAYGKPKLCEPEEELLQQFKREEVSPTGSFSAHYLSMFLLTAAC
LFFLILGLTYLGMRGTGVPEDGGLIKNPFDETFGKIQESEKNLLMSTLYKLHDRLAQIAGDHECGSSSQR
MLSVQEAAAYLKNLGPEYEDVFNTSLLWIFKNGKDVGIRCVGYGPEEDLTNITDVQFLQSTRPQMPFWCR
FRRAFITVTHRLLLLCLGVVLVCVALRYMRYRWTKEEEETRQMYDMVVKIIDVLRSHNEACQETKDLQPY
MPLPHVRDSLIQPQDRKKMKKVWDRAVDFLAANESRVRTETRRVGGADFLVWRWIQPSASCDKTLVIPSK
VWQGQAFHLDRRNSPPNSLTPCLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDRNSREGC
VYVKCLSPEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLKPANKHMNSLSHLRLRTG
LANSQGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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