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Report for CCDS26248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26248.1 Public Mus musculus 13 Ggps1 23 108 98 CCDS HistoryNCBI Gene:14593Re-query CCDS DB by CCDS ID:26248.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170957.2 ENSMUSP00000126603.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170957.2Link to Ensembl Protein Viewer:ENSMUSP00000126603.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170957Re-query CCDS DB by Protein ID:ENSMUSP00000126603
Original member Current member NCBI NM_001331119.1 NP_001318048.1 Accepted alive Link to Nucleotide Sequence:NM_001331119.1Link to Protein Sequence:NP_001318048.1Re-query CCDS DB by Nucleotide ID:NM_001331119Re-query CCDS DB by Protein ID:NP_001318048Link to BLAST:NP_001318048.1
Original member Current member NCBI NM_001331176.1 NP_001318105.1 Accepted alive Link to Nucleotide Sequence:NM_001331176.1Link to Protein Sequence:NP_001318105.1Re-query CCDS DB by Nucleotide ID:NM_001331176Re-query CCDS DB by Protein ID:NP_001318105Link to BLAST:NP_001318105.1
Original member Current member NCBI NM_001331177.1 NP_001318106.1 Accepted alive Link to Nucleotide Sequence:NM_001331177.1Link to Protein Sequence:NP_001318106.1Re-query CCDS DB by Nucleotide ID:NM_001331177Re-query CCDS DB by Protein ID:NP_001318106Link to BLAST:NP_001318106.1
Original member Current member NCBI NM_001331178.1 NP_001318107.1 Accepted alive Link to Nucleotide Sequence:NM_001331178.1Link to Protein Sequence:NP_001318107.1Re-query CCDS DB by Nucleotide ID:NM_001331178Re-query CCDS DB by Protein ID:NP_001318107Link to BLAST:NP_001318107.1
Original member Current member NCBI NM_010282.3 NP_034412.1 Accepted alive Link to Nucleotide Sequence:NM_010282.3Link to Protein Sequence:NP_034412.1Re-query CCDS DB by Nucleotide ID:NM_010282Re-query CCDS DB by Protein ID:NP_034412Link to BLAST:NP_034412.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001318048.1 300 Q9WTN0 300 100% 0 0
NP_001318105.1 300 Q9WTN0 300 100% 0 0
NP_001318106.1 300 Q9WTN0 300 100% 0 0
NP_001318107.1 300 Q9WTN0 300 100% 0 0
NP_034412.1 300 Q9WTN0 300 100% 0 0

Chromosomal Locations for CCDS 26248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 14053694 14054455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14055150 14055220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 14057796 14057865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAGAAAACTAAAGAGAAAGCTGAGAGGATTCTTCTAGAGCCCTATAGGTACTTACTTCAGTTACCAG
GTAAACAGGTGAGAAGCAAACTTTCACAGGCATTTAATCACTGGCTGAAAGTTCCAGAAGACAAGCTACA
GATTATCATTGAAGTGACTGAAATGTTGCATAATGCCAGTTTACTCATTGATGATATTGAAGACAGTTCA
AAGCTCCGACGTGGTTTCCCAGTGGCTCACAGCATCTATGGTGTCCCATCTGTCATTAATTCTGCCAATT
ACGTCTACTTCCTTGGACTGGAAAAAGTCTTAACCCTTGATCACCCGGATGCGGTGAAGCTTTTCACACG
CCAGCTTCTGGAACTTCATCAGGGACAAGGCCTCGATATTTACTGGAGGGACACCTACACTTGTCCAACT
GAAGAAGAATATAAAGCCATGGTGTTGCAGAAGACAGGTGGTTTGTTTGGATTAGCAGTAGGTCTTATGC
AGCTGTTCTCTGATTACAAAGAAGATCTAAAGCCACTGCTTGACACACTTGGGCTCTTTTTCCAGATTAG
AGATGATTATGCCAATCTACACTCCAAAGAATACAGTGAAAACAAAAGTTTCTGTGAAGACTTGACAGAA
GGGAAGTTCTCATTCCCCACTATCCATGCCATTTGGTCAAGGCCAGAAAGCACCCAGGTACAGAACATCC
TGCGCCAGAGAACAGAGAATATAGATATTAAAAAGTATTGTGTGCAGTACCTGGAGGATGTAGGTTCTTT
TGCATACACTCGACACACTCTTAGAGAGCTTGAAGCTAAAGCCTACAAACAAATTGAGGCCTGTGGTGGG
AACCCTTCACTAGTGGCTTTAGTCAAGCACTTAAGTAAGATGTTCACAGAAGAAAATAAATAA

Translation (300 aa):
MEKTKEKAERILLEPYRYLLQLPGKQVRSKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDSS
KLRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDTYTCPT
EEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE
GKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVQYLEDVGSFAYTRHTLRELEAKAYKQIEACGG
NPSLVALVKHLSKMFTEENK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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