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Report for CCDS29056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29056.1 Public Mus musculus 18 Snrpd1 23 108 98 CCDS HistoryNCBI Gene:20641Re-query CCDS DB by CCDS ID:29056.1Re-query CCDS DB by GeneID:20641See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002551.4 ENSMUSP00000002551.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002551.4Link to Ensembl Protein Viewer:ENSMUSP00000002551.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002551Re-query CCDS DB by Protein ID:ENSMUSP00000002551
Original member Current member NCBI NM_009226.4 NP_033252.1 Accepted alive Link to Nucleotide Sequence:NM_009226.4Link to Protein Sequence:NP_033252.1Re-query CCDS DB by Nucleotide ID:NM_009226Re-query CCDS DB by Protein ID:NP_033252Link to BLAST:NP_033252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033252.1 119 P62315 119 100% 0 0

Chromosomal Locations for CCDS 29056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 10617913 10617926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10623631 10623707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10626826 10627017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 10627794 10627870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGAAGCTCGTGAGATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAATGGGACAC
AA
GTCCATGGAACAATCACAGGTGTAGATGTCAGCATGAACACACACCTTAAAGCTGTGAAAATGACCCT
G
AAGAACAGAGAACCTGTACAGTTGGAAACATTGAGTATTCGAGGCAATAACATTCGGTATTTTATTCTA
CCA
GACAGCTTACCTCTAGATACACTACTTGTGGATGTTGAACCTAAGGTGAAGTCTAAGAAAAGAGAAG
CT
GTTGCAGGAAGAGGCCGAGGCCGGGGTAGAGGAAGAGGACGTGGTCGTGGCAGAGGAAGAGGGGGTCC
T
AGGCGATAA


Translation (119 aa):
MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFIL
P
DSLPLDTLLVDVEPKVKSKKREA
VAGRGRGRGRGRGRGRGRGRGGPRR



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser