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Report for CCDS24099.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24099.1 Public Mus musculus 10 Ttc41 23 108 98 CCDS HistoryNCBI Gene:103220Re-query CCDS DB by CCDS ID:24099.1Re-query CCDS DB by GeneID:103220See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24099.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061458.8 ENSMUSP00000062844.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061458.8Link to Ensembl Protein Viewer:ENSMUSP00000062844.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061458Re-query CCDS DB by Protein ID:ENSMUSP00000062844
Original member Current member EBI ENSMUST00000217747.1 ENSMUSP00000151242.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217747.1Link to Ensembl Protein Viewer:ENSMUSP00000151242.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217747Re-query CCDS DB by Protein ID:ENSMUSP00000151242
Original member Current member NCBI NM_001003939.2 NP_001003939.2 Accepted alive Link to Nucleotide Sequence:NM_001003939.2Link to Protein Sequence:NP_001003939.2Re-query CCDS DB by Nucleotide ID:NM_001003939Re-query CCDS DB by Protein ID:NP_001003939Link to BLAST:NP_001003939.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003939.2 409 Q692V3-4 409 99.511% 0 2

Chromosomal Locations for CCDS 24099.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 86712944 86713739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86719478 86719664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86724198 86724444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGAGCGACGAGGCAAGTGAGACCGGACAAAGATACAACGGTCAACCCATTTTAAAGCGCCAGAAACCCA
TCCTACCTTACATATGTTCCACTCTAGATTTTCAAGAAGAGAGAGACTTTTTGGCCAAAAGCATCTTCCC
TCGGCTTAATGACATCTGCAGCTCCCGGGGCACCTACTTCAAAGCTGTGGACTTGAGATGGTCAGCTGTG
AAGGCCCATAAGTCCTTCACCAGCAACCAGTTCCGACAGTACTCCTGTCTCCAGTCTCAACACCTGAAAC
TCTCCCTGGACTACGTGAACAGATGCTTCCCGTTTTTCATCGGCCTGCTGGGGCAGACCTACGGAGATTT
CCTCCCCGACTACACACCTTTCCTGTTATCCCAAGTGAAGGACTTCGAAAGTTTATCCAAGGGAGAACAG
AATCTATACATTGCTGCCAAAAATGGTTACCCTTGGGTTCTCAAGACTCCCAACTGCAGCCTGACAGAGT
TCGAGATCATCCAAGCAGTATTCCGGAAGAAATCTCAATTTCAATTTTTCTACTTCCGGACATCAAATTC
GCTGCTGCGAACTTTTAATGAGGAAGAGGAGGAGGAAGAGGAGAAGCTGTCCTCAGCATATCTGTTGAAC
GAACAGGGGAAGATGAAGGTTGGAAAGCTCAAGGCTAAGATCATTGGCAAAGGGCTTCCTGTCAGATTCT
ACAGAGACCTGGAGGAACTGGGGGATATGGTTTGGAAGGACTGGTCGGCTGTTGTGGAAAAGCTCTATCC
ATTCACTACGATCATGGGAAATATAGACTACAAACACAGTTTCGAGAATTTGTATCATGAAGAGTTTGTG
GAGAACTGCAAGCAAGTTTTTGTTACTTCCAAGGAGTCAAACAGAACCTTTGAAATATTGGAAAGATTTG
CTATAAAAGATCTTGATCTTGATCTTGATACTGACAGTACTATAGCAGGTTCGGGGTTAGACTCCATTCT
CAGAATCAATTCCCTTCCAACTTGTAAGTCCATTTTGCTCTTGTCTGGGGAACGCGGCTGTGGGAAGTCC
ACACTGATTGCCAACTGGGTCAGTAATTTCCAAAGCAAACACCCCGGAGTGCTGATGATCCCATACTTTG
TGGGCAGTACGTGTGAGAGCTGTGACATCATGTCTGTGATCCACTACTTCGTCATGGAGCTTCAGCACAG
AGCCAACGGTAACCGGGCCAGCCTTATGGGCAGAAAGTGA

Translation (409 aa):
MSDEASETGQRYNGQPILKRQKPILPYICSTLDFQEERDFLAKSIFPRLNDICSSRGTYFKAVDLRWSAV
KAHKSFTSNQFRQYSCLQSQHLKLSLDYVNRCFPFFIGLLGQTYGDFLPDYTPFLLSQVKDFESLSKGEQ
NLYIAAKNGYPWVLKTPNCSLTEFEIIQAVFRKKSQFQFFYFRTSNSLLRTFNEEEEEEEEKLSSAYLLN
EQGKMKVGKLKAKIIGKGLPVRFYRDLEELGDMVWKDWSAVVEKLYPFTTIMGNIDYKHSFENLYHEEFV
ENCKQVFVTSKESNRTFEILERFAIKDLDLDLDTDSTIAGSGLDSILRINSLPTCKSILLLSGERGCGKS
TLIANWVSNFQSKHPGVLMIPYFVGSTCESCDIMSVIHYFVMELQHRANGNRASLMGRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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