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Report for CCDS17403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17403.1 Public Mus musculus 3 Kpna4 23 108 98 CCDS HistoryNCBI Gene:16649Re-query CCDS DB by CCDS ID:17403.1Re-query CCDS DB by GeneID:16649See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194558.5 ENSMUSP00000141227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194558.5Link to Ensembl Protein Viewer:ENSMUSP00000141227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194558Re-query CCDS DB by Protein ID:ENSMUSP00000141227
Original member Current member NCBI NM_008467.4 NP_032493.1 Accepted alive Link to Nucleotide Sequence:NM_008467.4Link to Protein Sequence:NP_032493.1Re-query CCDS DB by Nucleotide ID:NM_008467Re-query CCDS DB by Protein ID:NP_032493Link to BLAST:NP_032493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032493.1 521 O35343 521 100% 0 0

Chromosomal Locations for CCDS 17403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 69074089 69074187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69076750 69076844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69079377 69079539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69081159 69081230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69084050 69084154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69085687 69085815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69087457 69087588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69089776 69089820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69089908 69090077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69092810 69092896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69094653 69094738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69095520 69095615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69101052 69101104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69101202 69101231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69101341 69101430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69102204 69102248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 69126732 69126800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCGGACAACGAGAAATTGGACAACCAACGGCTCAAGAATTTTAAGAACAAAGGCCGTGACTTGGAGA
CTATGAGAAGACAACGAAATGAAGTTGTAGTTGAATTAAGGAAGAATAAAAGAGATGAACATCTCTTAAA
GAGAAGGAATGTACCACAAGAAGATATCTGTGAAGACTCCGATATAGATGGTGATTATAGAGTGCAAAAT
ACCTCTCTAGAAGCTATTGTTCAAAATGCTTCAAGTGATAACCAAGGAATTCAATTAAGTGCAGTTCAAG
CTGCTAGGAAGCTTTTATCCAGTGATCGAAATCCACCAATTGATGACTTAATAAAATCTGGAATATTGCC
TATTTTAGTTCATTGTCTTGAAAGAGATGACAATCCTTCTTTACAGTTTGAAGCTGCGTGGGCTTTGACA
AACATTGCATCTGGAACGTCTGAACAAACGCAAGCAGTGGTTCAGTCCAATGCTGTGCCACTTTTCTTGA
GGCTTCTGCATTCACCCCATCAGAATGTCTGTGAACAGGCAGTATGGGCGTTGGGAAACATCATAGGTGA
TGGACCTCAGTGTAGAGATTATGTGATAAGTCTTGGAGTTGTAAAACCTCTGCTTTCATTCATAAGTCCA
TCTATTCCTATAACATTCTTAAGAAATGTTACCTGGGTTATGGTCAATTTATGTCGCCACAAAGACCCAC
CACCACCAATGGAGACAATTCAGGAGATTCTTCCAGCTCTTTGTGTATTAATTCATCACACAGATGTAAA
TATCCTGGTAGATACTGTCTGGGCCCTGTCTTACCTTACGGATGCTGGCAATGAACAGATACAGATGGTA
ATAGACTCTGGCATAGTTCCTCACTTGGTTCCGCTACTCAGCCACCAGGAAGTTAAAGTTCAGACTGCTG
CACTGCGAGCTGTGGGCAACATTGTCACTGGAACTGATGAGCAAACACAAGTAGTTTTAAACTGTGATGC
TCTCTCACACTTCCCAGCACTCCTCACTCATCCCAAAGAGAAAATTAATAAAGAAGCAGTGTGGTTCCTC
TCCAACATCACTGCAGGAAATCAACAGCAGGTTCAGGCAGTAATTGATGCCAATCTTGTACCAATGATAA
TACACCTTTTGGATAAGGGAGATTTTGGCACTCAGAAAGAAGCTGCCTGGGCCATAAGTAACTTAACAAT
CAGCGGAAGGAAAGACCAAGTGGCCTATCTTATCCAACAAAATGTTATTCCACCTTTTTGCAATTTGCTG
ACTGTAAAAGATGCACAAGTTGTGCAAGTAGTACTTGATGGACTAAGTAATATATTAAAAATGGCTGAAG
ATCAAGCAGAAACCATAGCCAATCTCATAGAAGAATGTGGTGGACTGGAGAAAATTGAACAACTTCAGAA
TCATGAAAATGAGGACATCTACAAATTGGCCTATGAGATCATTGACCAGTTCTTCTCTTCAGATGATATT
GATGAAGATCCTAGCCTTGTTCCAGAGTCAGTTCAAGGTGGAACATTTGGTTTCAATTCATCGACCAATG
TACCAACAGAGGGGTTCCAGTTTTAG

Translation (521 aa):
MADNEKLDNQRLKNFKNKGRDLETMRRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQN
TSLEAIVQNASSDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALT
NIASGTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISP
SIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWALSYLTDAGNEQIQMV
IDSGIVPHLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFL
SNITAGNQQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLL
TVKDAQVVQVVLDGLSNILKMAEDQAETIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDDI
DEDPSLVPESVQGGTFGFNSSTNVPTEGFQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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