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Report for CCDS20165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20165.1 Public Mus musculus 6 Ghrhr 23 108 98 CCDS HistoryNCBI Gene:14602Re-query CCDS DB by CCDS ID:20165.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063578.5 ENSMUSP00000068120.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063578.5Link to Ensembl Protein Viewer:ENSMUSP00000068120.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000063578Re-query CCDS DB by Protein ID:ENSMUSP00000068120
Original member Current member NCBI NM_001003685.3 NP_001003685.2 Accepted alive Link to Nucleotide Sequence:NM_001003685.3Link to Protein Sequence:NP_001003685.2Re-query CCDS DB by Nucleotide ID:NM_001003685Re-query CCDS DB by Protein ID:NP_001003685Link to BLAST:NP_001003685.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001003685.2 423 P32082 423 100% 0 0

Chromosomal Locations for CCDS 20165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 55376385 55376441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55378876 55378978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55379084 55379191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55379688 55379785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55380752 55380849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55381704 55381836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55383268 55383421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55383702 55383762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55384115 55384184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55384732 55384823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55385394 55385523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55386812 55386853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55388169 55388294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGGATGGCCTGATGTGGGCTACCCGTATCCTCTGCTTGCTGAGCCTGTGCGGAGTTACACTGGGTCACC
TCCACCTAGAATGTGACTTCATCACTCAGCTGAGAGACGATGAGCTTGCATGTCTTCAGGCGGCAGAGGG
GACCAACAACACCTCCCTGGGATGCCCTGGGACCTGGGATGGGCTGCTGTGCTGGCCCCCGACAGGCTCT
GGCCAGTGGGTCTCTCTCCCCTGCCCTGAATTCTTCTCTCACTTCGGCTCAGACACAGGGTTTGTGAAGA
GGGACTGCACCATCACTGGCTGGTCTAATCCCTTCCCACCATACCCTGTGGCTTGCCCTGTGCCCTTGGA
ACTGTTAACCAAGGAGAAATCGTACTTCTCCACGGTGAAGATCATCTACACCACGGGCCACAGCATCTCC
ATTGTAGCCCTCTGCGTGGCTATTGCCATCCTGGTTGCCCTCAGGAGGCTCCACTGCCCCAGGAACTACA
TCCACACGCAGCTGTTTGCCACCTTCATCCTCAAGGCCAGTGCTGTGTTCTTGAAGGATGCCGCCATCTT
CCAGGGGGATAGCACGGACCACTGCAGCATGTCCACTGTCCTGTGCAAGGTCTCTGTGGCCATCTCACAT
TTGGCCACCATGACCAACTTCAGCTGGCTGTTGGCAGAAGCTGTCTACCTGAGCTGCCTGTTGGCCTCCA
CATCCCCCAGGTCCAAACCAGCTTTTTGGTGGCTGGTCCTGGCTGGCTGGGGGCTCCCCGTGCTATGCAC
TGGTACGTGGGTGGGCTGCAAACTGGCTTTTGAGGACACTGAGTGCTGGGACTTAGACAACAGCTCCCCC
TGCTGGTGGATCATCAAAGGACCCATAGTCCTCTCTGTTGGGGTGAACTTTGGGCTGTTTCTCAATATAA
TTTGTATCCTGCTGAGGAAGCTGGAGCCTGCACAAGGCGGCCTACACACACGGGCTCAGTACTGGCGGCT
TTCCAAGTCAACACTTCTCCTTATACCGCTGTTTGGAATTCATTACATCATCTTCAACTTCCTGCCTGAC
AGTGCTGGCCTTGACATCCGTGTACCCCTGGAGCTGGGGTTGGGGTCCTTTCAGGGCTTCATTGTTGCTG
TCCTCTACTGCTTCCTCAATCAAGAGGTGAGGACAGAGATTTCACGCAAATGGTATGGCCACGACCCTGA
ACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCGATCGAGATTGAAGGTGCTGACC
TCTGAGTGCTAG

Translation (423 aa):
MDGLMWATRILCLLSLCGVTLGHLHLECDFITQLRDDELACLQAAEGTNNTSLGCPGTWDGLLCWPPTGS
GQWVSLPCPEFFSHFGSDTGFVKRDCTITGWSNPFPPYPVACPVPLELLTKEKSYFSTVKIIYTTGHSIS
IVALCVAIAILVALRRLHCPRNYIHTQLFATFILKASAVFLKDAAIFQGDSTDHCSMSTVLCKVSVAISH
LATMTNFSWLLAEAVYLSCLLASTSPRSKPAFWWLVLAGWGLPVLCTGTWVGCKLAFEDTECWDLDNSSP
CWWIIKGPIVLSVGVNFGLFLNIICILLRKLEPAQGGLHTRAQYWRLSKSTLLLIPLFGIHYIIFNFLPD
SAGLDIRVPLELGLGSFQGFIVAVLYCFLNQEVRTEISRKWYGHDPELLPARRTCTEWTTPPRSRLKVLT
SEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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