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Report for CCDS21446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21446.1 Public Mus musculus 7 Ccdc83 23 108 98 CCDS HistoryNCBI Gene:75338Re-query CCDS DB by CCDS ID:21446.1Re-query CCDS DB by GeneID:75338See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21446.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040413.1 ENSMUSP00000047758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040413.1Link to Ensembl Protein Viewer:ENSMUSP00000047758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000040413Re-query CCDS DB by Protein ID:ENSMUSP00000047758
Original member Current member NCBI NM_029256.3 NP_083532.1 Accepted alive Link to Nucleotide Sequence:NM_029256.3Link to Protein Sequence:NP_083532.1Re-query CCDS DB by Nucleotide ID:NM_029256Re-query CCDS DB by Protein ID:NP_083532Link to BLAST:NP_083532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083532.1 305 Q9D4V3-1 305 100% 0 0

Chromosomal Locations for CCDS 21446.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 90236258 90236503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90236878 90236946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90240246 90240337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90244037 90244204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90247017 90247179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90250483 90250567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 90259430 90259524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGACAGCTCGGCCAAAGGAAGCAAAAAGGATGCCCCTGATGGACCACCAAAAGACTCGAAGCTGCCTG
TCAGTGAGGCCCTTCTGGACTATCATCGTGAAATAAAGGAGAATGCGGTGGAGCGATTCATGTTCCATAT
CAAGAAGCTGAGGGAAAAGAATCAAAAGTACCAAGAGAGGAATAGACGCTTGAAGGAGGAACAGAATTGG
CACATAAAGAATCTTATAAAAGAACTGAAAGAGAAGAATTTGGATGAGGCACCAATAGTAACAAGAGAGG
AAGTGGAGGAGGCAATGAAGGAAAAATGGGAGTTTGAAAGACAACAGGAGGCAAGCTTGAAAGAAATGCG
CATACAAATAAATGAGGCTGAGAAGCTATTTCTTGAAAAACTCAGTGAAAAGGAATATTGGGAAGAGTAC
AAGAATGTAGGGAGCGCTCAGCACGCTCAACTCATTGTTTCCTTACAAAATGACATCGACACAGTTAAAG
AAAATGCAGAGAAAATGTCAGAACAGTATAAAGTCACCCTGGAAGATGAAAAAAAGAGGATATCCAGAGA
AACAATGATCCAACTGAAACAGAGGAAAGAATGGGCCACACAGCACGCTGTAAGGTTCATTGACAAGAAC
AACTATCGAGAGATCTGGGAAAATGACTGGCTAAAAAAAGAAGGTGACACAGCATCCTTTGGAAATGTGC
TCAGCCTTCTGGACTTCCTTCCCCCTGACCTGCACACGGCAGAACCTTGTGTAAGCAGTGGTCAAAGCAG
AGGTTCCCTTAGGATCCTGGCTCCCTTTGCACTGCAGCTCTGGAGCAAGCTCTCTGGTCTTCTCCCCACA
CTGGTAACCCCTGATCCAGTCTGCATAATATGGAGTTTTGGACCAGGACAAACAAACAGCATGGCTATTT
GCCCGTGA

Translation (305 aa):
MDSSAKGSKKDAPDGPPKDSKLPVSEALLDYHREIKENAVERFMFHIKKLREKNQKYQERNRRLKEEQNW
HIKNLIKELKEKNLDEAPIVTREEVEEAMKEKWEFERQQEASLKEMRIQINEAEKLFLEKLSEKEYWEEY
KNVGSAQHAQLIVSLQNDIDTVKENAEKMSEQYKVTLEDEKKRISRETMIQLKQRKEWATQHAVRFIDKN
NYREIWENDWLKKEGDTASFGNVLSLLDFLPPDLHTAEPCVSSGQSRGSLRILAPFALQLWSKLSGLLPT
LVTPDPVCIIWSFGPGQTNSMAICP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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