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Report for CCDS16348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16348.1 Public Mus musculus 2 Or4a67 23 108 98 CCDS HistoryNCBI Gene:257887Re-query CCDS DB by CCDS ID:16348.1Re-query CCDS DB by GeneID:257887See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099811.1 ENSMUSP00000097399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099811.1Link to Ensembl Protein Viewer:ENSMUSP00000097399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099811Re-query CCDS DB by Protein ID:ENSMUSP00000097399
Original member Current member EBI ENSMUST00000217588.2 ENSMUSP00000149757.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217588.2Link to Ensembl Protein Viewer:ENSMUSP00000149757.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217588Re-query CCDS DB by Protein ID:ENSMUSP00000149757
Original member Current member NCBI NM_001005227.2 NP_001005227.2 Accepted alive Link to Nucleotide Sequence:NM_001005227.2Link to Protein Sequence:NP_001005227.2Re-query CCDS DB by Nucleotide ID:NM_001005227Re-query CCDS DB by Protein ID:NP_001005227Link to BLAST:NP_001005227.2

Chromosomal Locations for CCDS 16348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88767303 88768313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGAAAATCATAAAAACATCACAGAGTTCATTTTTATGGGTCTTTGGGAGAATAGACAAATAGAGTTGC
TGTTCTTTTTCTTGTTCCTGCTTTGCTACCTGGCTGTCTTAATGGGGAACTCCGTCATCTTTCTCACCAT
CACCTGCAGCCACCTAATCGAACAACCAATGTATTATTTTCTCTGCCATCTTTCCCTCATGGACCTCTGC
TACCCCTCCACTGTGATTCCTAGGCTCATCAGGGACTTGGCAGCAACAAGAAAAAACATTTCCTATAATG
AGTGCATGACCCAGCTCTTCACTGCCCACTTGCTGGCAGGTGTGGAAATCTTCATCCTGGTGTCCATGGC
CTTGGACCGCTATGTTGCCATTGTCAAGCCCCTGCACTACATGGTTATCATGAGCAGGAAGAGATGTGAT
ATGTTGATTGTCACGGCCTGGATACTGGGGTTCTGGCACTCCATTGCTTTACTACTGATGGTGCTCAGTC
TGCCATTCTGTGGTCCCAACCACATCAATCACTACTTCTGTGACATTAAGCCGCTTTTGAAGCTGGTCTG
TAAAGATGTTCATGTTGTTAGTATCTTAGCAATTGTTAACTCTGGGATGGTGCTTTTTGCCATTTTTATT
GTACTACTTGCCTCTTACATACTCATATTGTATTCTCTGAGGACAAGATCATCTGCAGGGAAGCGGAAAG
CACTCTCTACCTGTAGTTCACACATAATGGTAGTAGTTTTATTTTTTGGGCCCTGTATTTATACCTATGT
TTTACCTGCAGGAAGTGAGAACAAGGATAAGGAAATTTCTGTGTTTTACACTGTGATTGCCCCCATCCTA
AATCCTGTCATCTACACACTGAGAAACAGTGAGATGAAAAGTGCCATGCACAAAGTGTGGTCTCGGCTGT
CAAATTTGGGGTTGAAATACGTGAAACCATCTTGTAATTCTGCTCTGATGTTCCTAGGTCAGCTACTATC
CAACAGGTCACAGAAAGTACAAACAATTTAG

Translation (336 aa):
MENHKNITEFIFMGLWENRQIELLFFFLFLLCYLAVLMGNSVIFLTITCSHLIEQPMYYFLCHLSLMDLC
YPSTVIPRLIRDLAATRKNISYNECMTQLFTAHLLAGVEIFILVSMALDRYVAIVKPLHYMVIMSRKRCD
MLIVTAWILGFWHSIALLLMVLSLPFCGPNHINHYFCDIKPLLKLVCKDVHVVSILAIVNSGMVLFAIFI
VLLASYILILYSLRTRSSAGKRKALSTCSSHIMVVVLFFGPCIYTYVLPAGSENKDKEISVFYTVIAPIL
NPVIYTLRNSEMKSAMHKVWSRLSNLGLKYVKPSCNSALMFLGQLLSNRSQKVQTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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