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Report for CCDS49963.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49963.2 Public Mus musculus 17 Prdm9 23 108 98 CCDS HistoryNCBI Gene:213389Re-query CCDS DB by CCDS ID:49963.2Re-query CCDS DB by GeneID:213389See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 49963.1
The coding region has been updated to reflect the use of an in-frame downstream start codon, which is better supported by conservation data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49963.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167994.9 ENSMUSP00000131871.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167994.9Link to Ensembl Protein Viewer:ENSMUSP00000131871.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167994Re-query CCDS DB by Protein ID:ENSMUSP00000131871
Original member Current member NCBI NM_144809.3 NP_659058.3 Accepted alive Link to Nucleotide Sequence:NM_144809.3Link to Protein Sequence:NP_659058.3Re-query CCDS DB by Nucleotide ID:NM_144809Re-query CCDS DB by Protein ID:NP_659058Link to BLAST:NP_659058.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659058.3 843 Q96EQ9-1 843 100% 0 0

Chromosomal Locations for CCDS 49963.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15543973 15545360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15553352 15553545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15554688 15554755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15555087 15555358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15555566 15555667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15557301 15557457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15559023 15559072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15562415 15562522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15562814 15562937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15563221 15563289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2532 nt):
ATGAACACCAACAAGCTGGAAGAAAATAGTCCTGAAGAAGATACAGGGAAATTCGAGTGGAAACCCAAGG
TCAAAGATGAATTCAAAGACATTTCCATATACTTCTCCAAAGAAGAATGGGCAGAGATGGGAGAGTGGGA
GAAAATTCGCTATAGAAATGTGAAAAGGAACTATAAAATGCTGATTTCAATAGGTCTCAGAGCCCCTAGA
CCAGCTTTCATGTGTTACCAAAGGCAAGCAATGAAACCCCAAATAAATGACAGTGAGGATTCTGATGAAG
AGTGGACACCTAAGCAACAAGTCAGTCCTCCTTGGGTGCCTTTCCGGGTGAAGCACAGTAAACAGCAGAA
GGAATCATCTAGAATGCCATTTAGTGGTGAATCTAATGTGAAGGAAGGGTCTGGAATAGAAAATTTGCTG
AATACAAGTGGCTCAGAACACGTCCAGAAACCAGTGTCCTCCCTTGAAGAAGGAAATACCTCTGGACAGC
ACTCTGGGAAAAAACTGAAACTTAGGAAAAAGAACGTTGAAGTGAAAATGTACAGGCTGCGAGAGAGAAA
GGGCCTTGCCTATGAGGAGGTCAGCGAGCCTCAGGATGATGACTATCTCTATTGTGAGAAGTGCCAGAAT
TTCTTCATCGACAGTTGTCCCAACCATGGGCCTCCTTTATTTGTAAAAGACAGTATGGTGGACAGGGGGC
ATCCCAACCACTCAGTCCTCAGTCTGCCCCCTGGGCTAAGAATTAGTCCATCGGGCATCCCTGAAGCTGG
ACTTGGAGTATGGAATGAAGCATCTGATCTACCAGTCGGTCTGCACTTTGGCCCCTATGAGGGTCAGATC
ACAGAGGATGAAGAGGCAGCCAACAGTGGTTACTCCTGGCTGATTACCAAGGGAAGAAACTGCTATGAGT
ATGTGGATGGACAGGACGAGTCCCAAGCCAACTGGATGAGGTATGTGAACTGTGCCCGGGATGATGAAGA
GCAGAACCTGGTAGCCTTTCAATATCACAGGAAAATCTTCTATCGAACCTGCCGGGTTATCAGACCAGGT
TGTGAGCTTCTGGTCTGGTATGGGGATGAGTACGGCCAGGAACTGGGCATTAAGTGGGGAAGCAAGATGA
AGAAAGGATTCACAGCAGGAAGAGAACTAAGGACAGAAATTCATCCTTGTCTTTTGTGCTCTTTGGCCTT
CTCAAGTCAGAAATTCCTCACTCAACATATGGAATGGAATCATCGCACTGAAATCTTCCCAGGAACATCT
GCAAGAATAAATCCTAAACCAGGAGATCCCTGTTCAGATCAGCTTCAGGAACAACATGTTGATTCACAGA
ACAAAAATGACAAGGCCAGCAATGAAGTAAAAAGAAAATCCAAACCCAGGCAGAGGATTTCAACAACCTT
TCCCAGCACACTCAAAGAACAAATGAGATCTGAGGAAAGTAAGAGAACTGTGGAAGAGCTCAGAACAGGC
CAGACAACAAATACAGAGGACACAGTCAAATCATTTATTGCATCAGAAATCTCAAGTATTGAAAGACAAT
GTGGGCAATATTTCAGTGATAAGTCAAATGTCAATGAGCACCAGAAGACACACACAGGGGAGAAGCCCTA
TGTTTGCAGGGAGTGTGGGCGGGGCTTTACACAGAACTCACACCTCATCCAGCACCAGAGGACACACACA
GGGGAGAAGCCCTATGTTTGCAGGGAGTGTGGGCGGGGCTTTACACAGAAGTCAGACCTCATCAAGCACC
AGAGGACACACACAGGGGAGAAGCCCTATGTTTGCAGGGAGTGTGGGCGGGGCTTTACACAGAAGTCAGA
CCTCATCAAGCACCAGAGGACACACACAGGGGAGAAGCCCTATGTTTGCAGGGAGTGTGGGCGGGGCTTT
ACACAGAAGTCAGTCCTCATCAAGCACCAGAGGACACACACAGGGGAGAAGCCCTATGTTTGCAGGGAGT
GTGGGCGGGGCTTTACACAGAAGTCAGTCCTCATCAAGCACCAGAGGACACACACAGGGGAGAAGCCCTA
TGTTTGCAGGGAGTGTGGGCGGGGCTTTACAGCGAAGTCAGTCCTCATCCAGCACCAGAGGACACACACA
GGGGAGAAGCCCTATGTTTGCAGGGAGTGTGGGCGGGGCTTTACAGCGAAGTCAAACCTCATCCAGCACC
AGAGGACACACACAGGGGAGAAGCCCTATGTTTGCAGGGAGTGTGGGCGGGGCTTTACAGCGAAGTCAGT
CCTCATCCAGCACCAGAGGACACACACAGGGGAGAAGCCCTATGTTTGCAGGGAGTGTGGGCGGGGCTTT
ACAGCGAAGTCAGTCCTCATCCAGCACCAGAGGACACACACAGGGGAGAAGCCCTATGTTTGCAGGGAGT
GTGGGCGGGGCTTTACACAGAAGTCAAACCTCATCAAGCACCAGAGGACACACACAGGGGAGAAGCCCTA
TGTTTGCAGGGAGTGTGGGTGGGGCTTTACACAGAAGTCAGACCTCATCCAGCACCAGAGGACACATACA
AGAGAGAAGTAA

Translation (843 aa):
MNTNKLEENSPEEDTGKFEWKPKVKDEFKDISIYFSKEEWAEMGEWEKIRYRNVKRNYKMLISIGLRAPR
PAFMCYQRQAMKPQINDSEDSDEEWTPKQQVSPPWVPFRVKHSKQQKESSRMPFSGESNVKEGSGIENLL
NTSGSEHVQKPVSSLEEGNTSGQHSGKKLKLRKKNVEVKMYRLRERKGLAYEEVSEPQDDDYLYCEKCQN
FFIDSCPNHGPPLFVKDSMVDRGHPNHSVLSLPPGLRISPSGIPEAGLGVWNEASDLPVGLHFGPYEGQI
TEDEEAANSGYSWLITKGRNCYEYVDGQDESQANWMRYVNCARDDEEQNLVAFQYHRKIFYRTCRVIRPG
CELLVWYGDEYGQELGIKWGSKMKKGFTAGRELRTEIHPCLLCSLAFSSQKFLTQHMEWNHRTEIFPGTS
ARINPKPGDPCSDQLQEQHVDSQNKNDKASNEVKRKSKPRQRISTTFPSTLKEQMRSEESKRTVEELRTG
QTTNTEDTVKSFIASEISSIERQCGQYFSDKSNVNEHQKTHTGEKPYVCRECGRGFTQNSHLIQHQRTHT
GEKPYVCRECGRGFTQKSDLIKHQRTHTGEKPYVCRECGRGFTQKSDLIKHQRTHTGEKPYVCRECGRGF
TQKSVLIKHQRTHTGEKPYVCRECGRGFTQKSVLIKHQRTHTGEKPYVCRECGRGFTAKSVLIQHQRTHT
GEKPYVCRECGRGFTAKSNLIQHQRTHTGEKPYVCRECGRGFTAKSVLIQHQRTHTGEKPYVCRECGRGF
TAKSVLIQHQRTHTGEKPYVCRECGRGFTQKSNLIKHQRTHTGEKPYVCRECGWGFTQKSDLIQHQRTHT
REK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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