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Report for CCDS20532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20532.1 Public Mus musculus 6 Gnb3 23 108 98 CCDS HistoryNCBI Gene:14695Re-query CCDS DB by CCDS ID:20532.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20532.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024206.5 ENSMUSP00000024206.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024206.5Link to Ensembl Protein Viewer:ENSMUSP00000024206.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024206Re-query CCDS DB by Protein ID:ENSMUSP00000024206
Original member Current member NCBI NM_013530.1 NP_038558.1 Accepted alive Link to Nucleotide Sequence:NM_013530.1Link to Protein Sequence:NP_038558.1Re-query CCDS DB by Nucleotide ID:NM_013530Re-query CCDS DB by Protein ID:NP_038558Link to BLAST:NP_038558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038558.1 340 Q61011 340 100% 0 0

Chromosomal Locations for CCDS 20532.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124834677 124834783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124835576 124835792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124836925 124837126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124837219 124837285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124837391 124837553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124837667 124837730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124837810 124837916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124839367 124839405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124839664 124839720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGGGGAGATGGAGCAGCTGAGGCAGGAGGCGGAGCAACTCAAGAAGCAGATTGCTGATGCCAGGAAAG
CCTGTGCGGACATCACTCTGGCTGAGCTTGTGTCTGGCCTGGAGGTGGTGGGCCGAGTCCAGATGCGGAC
ACGGAGGACATTAAGGGGACATCTGGCCAAGATCTATGCCATGCACTGGGCCACTGACTCTAAGCTGCTC
GTAAGTGCCTCGCAGGATGGGAAGCTGATCGTGTGGGACACTTATACCACCAATAAGGTGCATGCAATCC
CGCTGCGTTCCTCCTGGGTCATGACCTGTGCCTATGCACCATCAGGGAACTTTGTGGCATGTGGGGGGCT
GGACAACATGTGTTCAATCTACAACCTCAAATCCCGCGAGGGCAATGTCAAGGTCAGCCGGGAGCTCTCT
GCTCACACAGGTTATCTCTCCTGTTGCCGCTTCCTGGATGACAACAACATCGTGACTAGCTCTGGGGACA
CCACATGTGCCTTGTGGGACATTGAGACAGGACAGCAGAAGACAGTGTTTGTGGGACACACTGGTGACTG
CATGAGCCTGGCTGTGTCCCCAGACTACAAACTCTTCATTTCGGGAGCTTGCGATGCTAGCGCGAAGCTC
TGGGATGTGAGGGAAGGGACCTGTCGTCAGACTTTCACTGGCCATGAGTCAGACATCAATGCCATCTGTT
TCTTTCCCAACGGGGAGGCCATCTGCACTGGCTCAGATGACGCCTCCTGCCGCCTCTTTGACCTGAGGGC
AGACCAGGAACTGACTGCCTATTCCCAGGAGAGCATCATCTGCGGCATCACTTCAGTAGCCTTCTCGCTC
AGTGGGCGCCTGCTCTTTGCAGGCTATGATGACTTCAACTGCAATGTCTGGGACTCTCTGAAGTGCGAGC
GTGTAGGCATACTCTCTGGCCATGACAACAGAGTCAGCTGCCTGGGGGTCACTGCTGACGGCATGGCTGT
GGCCACTGGTTCCTGGGACAGCTTCCTCAAAATCTGGAACTGA

Translation (340 aa):
MGEMEQLRQEAEQLKKQIADARKACADITLAELVSGLEVVGRVQMRTRRTLRGHLAKIYAMHWATDSKLL
VSASQDGKLIVWDTYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNMCSIYNLKSREGNVKVSRELS
AHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYKLFISGACDASAKL
WDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSQESIICGITSVAFSL
SGRLLFAGYDDFNCNVWDSLKCERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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