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Report for CCDS15177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15177.1 Public Mus musculus 1 Gpc1 23 108 98 CCDS HistoryNCBI Gene:14733Re-query CCDS DB by CCDS ID:15177.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045970.7 ENSMUSP00000047199.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045970.7Link to Ensembl Protein Viewer:ENSMUSP00000047199.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045970Re-query CCDS DB by Protein ID:ENSMUSP00000047199
Original member Current member NCBI NM_016696.5 NP_057905.1 Accepted alive Link to Nucleotide Sequence:NM_016696.5Link to Protein Sequence:NP_057905.1Re-query CCDS DB by Nucleotide ID:NM_016696Re-query CCDS DB by Protein ID:NP_057905Link to BLAST:NP_057905.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057905.1 557 Q9QZF2 557 100% 0 0

Chromosomal Locations for CCDS 15177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 92831932 92832097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92853347 92853505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92854858 92855246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92855907 92856072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92856987 92857117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92857248 92857367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92857472 92857605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92857855 92858030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92858332 92858564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGAACTCCGGACCCGAGGCTGGTGGCTGCTGTGCGCGGCCGCCGCGCTGGTCGTCTGCGCCCGCGGGG
ACCCCGCCAGCAAGAGCCGGAGCTGCAGCGAAGTCCGCCAGATCTACGGGGCTAAGGGCTTTAGCCTGAG
CGATGTGCCTCAGGCAGAGATCTCGGGTGAGCACCTGCGGATCTGCCCCCAGGGCTACACTTGCTGTACT
AGTGAGATGGAGGAGAATTTGGCCAACCACAGCCGAATGGAGCTGGAGAGCGCACTCCATGACAGCAGCC
GCGCCCTGCAGGCCACACTGGCCACCCAGCTGCATGGCATCGATGACCACTTCCAGCGCCTGCTGAATGA
CTCGGAGCGCACACTGCAGGAGGCTTTCCCTGGGGCCTTTGGGGACCTGTATACGCAGAACACTCGTGCC
TTCCGGGACCTATATGCTGAGCTGCGCCTCTACTACCGTGGGGCCAACCTGCACCTTGAGGAGACGCTGG
CCGAGTTCTGGGCACGGCTGCTGGAGCGCCTCTTCAAGCAGCTGCACCCCCAGCTGCTGCCTGATGACTA
CCTGGACTGCCTGGGCAAGCAGGCGGAGGCACTGCGGCCGTTTGGAGATGCCCCTCGAGAACTGCGCCTG
CGGGCCACCCGTGCCTTTGTGGCTGCACGTTCCTTTGTGCAGGGCCTGGGTGTGGCCAGTGATGTAGTCC
GGAAGGTGGCCCAGGTACCTCTGGCCCCAGAATGTTCTCGGGCCATCATGAAGTTGGTCTACTGTGCTCA
TTGCCGGGGAGTCCCGGGCGCCCGGCCCTGCCCCGACTATTGCCGAAATGTGCTCAAAGGCTGCCTTGCC
AACCAGGCCGACCTGGATGCCGAGTGGAGGAACCTCCTGGACTCCATGGTGCTCATCACTGACAAGTTCT
GGGGCCCGTCGGGTGCGGAGAGTGTCATTGGCGGTGTGCACGTGTGGCTGGCGGAGGCCATCAACGCCCT
CCAGGACAACAAGGACACACTCACAGCTAAGGTCATCCAGGCCTGTGGAAACCCCAAGGTCAATCCCCAC
GGCTCTGGGCCCGAGGAGAAGCGTCGCCGTGGCAAATTGGCACTGCAGGAGAAGCCCTCCACAGGTACTC
TGGAAAAACTGGTCTCTGAGGCCAAGGCCCAGCTCCGAGACATTCAGGACTTCTGGATCAGCCTCCCAGG
GACACTGTGCAGTGAGAAGATGGCCATGAGTCCTGCCAGTGACGACCGCTGCTGGAATGGAATTTCCAAG
GGCCGGTACCTACCAGAGGTGATGGGTGACGGGCTGGCCAACCAGATCAACAACCCTGAGGTGGAAGTGG
ACATCACCAAGCCAGACATGACCATCCGCCAGCAGATTATGCAGCTCAAGATCATGACCAACCGTTTACG
TGGCGCCTATGGCGGCAACGACGTGGACTTCCAGGATGCTAGTGATGACGGCAGTGGCTCCGGCAGCGGT
GGCGGATGCCCAGATGACACCTGTGGCCGGAGGGTCAGCAAGAAGAGTTCCAGCTCCCGGACCCCCTTGA
CCCATGCCCTCCCCGGCCTGTCAGAACAGGAGGGACAGAAGACCTCAGCTGCCACCTGCCCAGAGCCCCA
CAGCTTCTTCCTGCTCTTCCTCGTCACCTTGGTCCTTGCGGCAGCCAGGCCCAGGTGGCGGTAA

Translation (557 aa):
MELRTRGWWLLCAAAALVVCARGDPASKSRSCSEVRQIYGAKGFSLSDVPQAEISGEHLRICPQGYTCCT
SEMEENLANHSRMELESALHDSSRALQATLATQLHGIDDHFQRLLNDSERTLQEAFPGAFGDLYTQNTRA
FRDLYAELRLYYRGANLHLEETLAEFWARLLERLFKQLHPQLLPDDYLDCLGKQAEALRPFGDAPRELRL
RATRAFVAARSFVQGLGVASDVVRKVAQVPLAPECSRAIMKLVYCAHCRGVPGARPCPDYCRNVLKGCLA
NQADLDAEWRNLLDSMVLITDKFWGPSGAESVIGGVHVWLAEAINALQDNKDTLTAKVIQACGNPKVNPH
GSGPEEKRRRGKLALQEKPSTGTLEKLVSEAKAQLRDIQDFWISLPGTLCSEKMAMSPASDDRCWNGISK
GRYLPEVMGDGLANQINNPEVEVDITKPDMTIRQQIMQLKIMTNRLRGAYGGNDVDFQDASDDGSGSGSG
GGCPDDTCGRRVSKKSSSSRTPLTHALPGLSEQEGQKTSAATCPEPHSFFLLFLVTLVLAAARPRWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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