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Report for CCDS10678.4 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10678.4 Under review, update Homo sapiens 16 SEPTIN1 24 110 108 CCDS HistoryNCBI Gene:1731Re-query CCDS DB by CCDS ID:10678.4Re-query CCDS DB by GeneID:1731See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 10678.2
The coding region has been updated to shorten the N-terminus, using a downstream start codon that is better supported by available peptide data and ribosome profiling data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10678.4

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321367.8 ENSP00000324511.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321367.8Link to Ensembl Protein Viewer:ENSP00000324511.5Re-query CCDS DB by Nucleotide ID:ENST00000321367Re-query CCDS DB by Protein ID:ENSP00000324511
Original member Current member EBI ENST00000652617.2 ENSP00000498586.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000652617.2Link to Ensembl Protein Viewer:ENSP00000498586.2Re-query CCDS DB by Nucleotide ID:ENST00000652617Re-query CCDS DB by Protein ID:ENSP00000498586
Original member Current member NCBI NM_001365977.2 NP_001352906.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365977.2Link to Protein Sequence:NP_001352906.1Re-query CCDS DB by Nucleotide ID:NM_001365977Re-query CCDS DB by Protein ID:NP_001352906Link to BLAST:NP_001352906.1
Original member Current member NCBI NM_052838.6 NP_443070.6 Pending alive Link to Nucleotide Sequence:NM_052838.6Link to Protein Sequence:NP_443070.6Re-query CCDS DB by Nucleotide ID:NM_052838Re-query CCDS DB by Protein ID:NP_443070Link to BLAST:NP_443070.6

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352906.1 372 Q8WYJ6-1 372 100% 0 0
NP_443070.6 372 Q8WYJ6-1 372 100% 0 0

Chromosomal Locations for CCDS 10678.4

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30378434 30378520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30378610 30378700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30379018 30379183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30379435 30379534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30379932 30380033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30381127 30381244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30381339 30381473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30381760 30381883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30382093 30382179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30382275 30382365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30382525 30382542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCTGGCGGAGTCATGGACAAGGAGTACGTGGGTTTTGCTGCCCTCCCCAACCAGCTGCACCGCAAGT
CTGTCAAGAAGGGGTTTGACTTCACGCTAATGGTGGCAGGGGAGTCAGGCCTAGGGAAATCCACCCTCAT
CAACAGCCTCTTCCTCACCAACCTCTATGAGGATCGCCAGGTGCCAGAGGCCAGTGCTCGCTTGACACAG
ACCCTGGCCATTGAGCGCCGGGGCGTAGAGATTGAGGAAGGGGGTGTGAAAGTGAAGCTGACCCTTGTGG
ACACACCTGGCTTTGGGGACTCAGTGGACTGCTCTGACTGCTGGCTTCCGGTGGTGAAATTCATCGAGGA
GCAATTTGAGCAGTACCTTAGGGATGAGAGTGGCCTGAACCGGAAGAACATCCAGGACTCCCGAGTCCAC
TGCTGCCTCTACTTCATCTCACCCTTCGGCCGGGGGCTCCGGCCCCTAGATGTGGCCTTCCTCCGGGCAG
TACACGAGAAAGTCAACATCATCCCAGTCATTGGCAAAGCGGATGCTCTGATGCCCCAGGAAACCCAGGC
CCTCAAGCAGAAGATCCGGGATCAGTTGAAGGAAGAGGAGATCCACATCTACCAGTTCCCCGAATGTGAC
TCTGATGAAGATGAAGACTTCAAGAGGCAGGATGCAGAGATGAAGGAAAGCATCCCTTTTGCAGTCGTGG
GATCATGCGAGGTGGTGAGGGATGGCGGGAACCGGCCGGTGAGGGGACGCCGCTACTCCTGGGGGACCGT
GGAGGTGGAGAACCCACATCACTGCGATTTCCTGAACCTGCGACGGATGCTGGTGCAGACACACCTGCAG
GACCTGAAAGAGGTGACGCACGATCTGCTCTACGAGGGCTACCGGGCCCGCTGCCTACAGAGCCTGGCCC
GGCCTGGGGCTCGCGATCGAGCCAGCCGCAGTAAGCTTTCCCGCCAGAGCGCCACAGAGATCCCGCTGCC
CATGCTGCCTCTGGCGGACACCGAGAAGCTGATCCGCGAGAAAGACGAAGAGCTGCGCCGCATGCAAGAG
ATGCTGGAGAAGATGCAGGCCCAAATGCAGCAGAGCCAGGCCCAGGGCGAGCAGTCAGACGCCCTCTGA

Translation (372 aa):
MAGGVMDKEYVGFAALPNQLHRKSVKKGFDFTLMVAGESGLGKSTLINSLFLTNLYEDRQVPEASARLTQ
TLAIERRGVEIEEGGVKVKLTLVDTPGFGDSVDCSDCWLPVVKFIEEQFEQYLRDESGLNRKNIQDSRVH
CCLYFISPFGRGLRPLDVAFLRAVHEKVNIIPVIGKADALMPQETQALKQKIRDQLKEEEIHIYQFPECD
SDEDEDFKRQDAEMKESIPFAVVGSCEVVRDGGNRPVRGRRYSWGTVEVENPHHCDFLNLRRMLVQTHLQ
DLKEVTHDLLYEGYRARCLQSLARPGARDRASRSKLSRQSATEIPLPMLPLADTEKLIREKDEELRRMQE
MLEKMQAQMQQSQAQGEQSDAL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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