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Report for CCDS52993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52993.1 Public Mus musculus X Fthl17b 23 108 98 CCDS HistoryNCBI Gene:434726Re-query CCDS DB by CCDS ID:52993.1Re-query CCDS DB by GeneID:434726See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 52993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105006.1 ENSMUSP00000100623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105006.1Link to Ensembl Protein Viewer:ENSMUSP00000100623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105006Re-query CCDS DB by Protein ID:ENSMUSP00000100623
Original member Current member NCBI NM_001085524.1 NP_001078993.1 Accepted alive Link to Nucleotide Sequence:NM_001085524.1Link to Protein Sequence:NP_001078993.1Re-query CCDS DB by Nucleotide ID:NM_001085524Re-query CCDS DB by Protein ID:NP_001078993Link to BLAST:NP_001078993.1

Chromosomal Locations for CCDS 52993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8962299 8962829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCCGAAGCGCCCTCTCGAGTGCGGCAGAACTATGACTGGCAGTGTGAGGATGCTATCAACACCCACA
TCCAGCTGCGCCTCTATGCCTCCTACGTGTACATGTCGATGGCAGTCTACTTTGACCGTGATGACGTGGC
CCAGGAGAACTTCAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCAGACCAGTGCAGAGATGTTCATG
CACCTGCAGAATAAGCGTGGAGGCTGCATCTCCCTTCAGGACATCGCGAGACCAGAACGTGACAGCTGGC
ACGGGGGATTTCAAGCCATGGAATGTGCCTTCCACATGGAGATGCTGATCAACCAGAGCCTGCTCAACAT
GCACGAAGTGGCCAAGGAGAAAGGCGACCCCCACCTCTGCCATTTCCTGGAGCAAAACTGCCTAGATCAG
CAGGTCGACATTTTGAAGGAGATGAGCGGCTACCTGACCAACCTGCGCCAGATGGGGGCCATAGAGCACA
ACTTGGCTGAGTACCTCTTTGACAAGCTCAGCCTGTCCTAA

Translation (176 aa):
MAEAPSRVRQNYDWQCEDAINTHIQLRLYASYVYMSMAVYFDRDDVAQENFKRFFLTKSHNCQTSAEMFM
HLQNKRGGCISLQDIARPERDSWHGGFQAMECAFHMEMLINQSLLNMHEVAKEKGDPHLCHFLEQNCLDQ
QVDILKEMSGYLTNLRQMGAIEHNLAEYLFDKLSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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