NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40925.1 Public Mus musculus X Slc25a43 23 108 98 CCDS HistoryNCBI Gene:194744Re-query CCDS DB by CCDS ID:40925.1Re-query CCDS DB by GeneID:194744See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047655.6 ENSMUSP00000035392.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047655.6Link to Ensembl Protein Viewer:ENSMUSP00000035392.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047655Re-query CCDS DB by Protein ID:ENSMUSP00000035392
Original member Current member NCBI NM_001085497.2 NP_001078966.1 Accepted alive Link to Nucleotide Sequence:NM_001085497.2Link to Protein Sequence:NP_001078966.1Re-query CCDS DB by Nucleotide ID:NM_001085497Re-query CCDS DB by Protein ID:NP_001078966Link to BLAST:NP_001078966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078966.1 341 A2A3V2 341 100% 0 0

Chromosomal Locations for CCDS 40925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 36743744 36744018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36752133 36752374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36757768 36757940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36775482 36775616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36777002 36777202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGCTACGTGGAGACGGGATGGCCGGTTAACCGGCAGCCAGCGGCTCCTGTGTGCGGGGCTGGCCGGGG
CGTTCAGCCTCAGCCTCACCGCGCCCCTGGAGCTTGCCACTGTGCTGGCCCAAGTCGGCAAGGTGCAAAG
CCACTCCCTGGGGCTGTGGGCCACCGGACGCCGGGTGTGGCTGTCCGAGGGGCCAAGGGCCCTGTGGAAA
GGGAATGGCGTGGCCTGCCTGCGCCTCTTCCCCTGCAGCATGGTACAGCTGGCCGCCTACCGAAAGTTCG
TTGTGCTATTCATGGATGACCTGGGCCGTATTTCCCAGTGGAGTTCCATTGTGACTGGAAGTCTCGCAGG
CATGGTTTCCACGATTGTCACATACCCTACAGACCTCATCAAAACCCGATTGATGGTGCAGAACGTGCTG
GAACCATCATACAGGGGGCTAATCCATGCTTTTTCTACTATTTATCAACAAGAAGGGTTCCTGGCCCTTT
ATCGAGGGGTATCCCTCACTGTTTTAGGTGCTGTTCCCTTCTCTGCTGGCTCCCTTCTAGTTTACATGAA
CCTGGAAAAAGTCTGGAATGGACCCCGGGACCGCTTTTCTCACCTGCAGAACTTTGCCAATGTCTGTGTG
GCTGCTGCTGTGAGCCAGACCCTCTCCTTTCCCTTTGACACTGTGAAGAGAAAGATGCAGGCTCAAAGTC
CTTATCTTCCCCACTATGGAGGAGTAGATGTCCACTTCTCAGGAGCAGCTGACTGCTTCCGGCAGATCGT
GAAAACCCAAGGGGTACTGGGGCTCTGGAACGGACTGACGGCTAACTTACTAAAGGTAGTTCCATATTTT
GGAGTTATGTTTAGCATGTTTGAGTTCTGTAAGAGAATTTTTCTTTATCAAAATGGTTACACCCTGTCCC
CACTGACCTATAAACTGACCCCAGGAGTGGACCAAAGTTTGAAGCCCCAGGAATTACGGGAGCTAAAGAA
GTTCTTCAAACGCAGAAAACTGCACTCCAAAACACCACCTTGGTAA

Translation (341 aa):
MATWRRDGRLTGSQRLLCAGLAGAFSLSLTAPLELATVLAQVGKVQSHSLGLWATGRRVWLSEGPRALWK
GNGVACLRLFPCSMVQLAAYRKFVVLFMDDLGRISQWSSIVTGSLAGMVSTIVTYPTDLIKTRLMVQNVL
EPSYRGLIHAFSTIYQQEGFLALYRGVSLTVLGAVPFSAGSLLVYMNLEKVWNGPRDRFSHLQNFANVCV
AAAVSQTLSFPFDTVKRKMQAQSPYLPHYGGVDVHFSGAADCFRQIVKTQGVLGLWNGLTANLLKVVPYF
GVMFSMFEFCKRIFLYQNGYTLSPLTYKLTPGVDQSLKPQELRELKKFFKRRKLHSKTPPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH