NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1739.1 Public Homo sapiens 2 PRR30 24 110 108 CCDS HistoryNCBI Gene:339779Re-query CCDS DB by CCDS ID:1739.1Re-query CCDS DB by GeneID:339779See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1739.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335524.7 ENSP00000335017.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335524.7Link to Ensembl Protein Viewer:ENSP00000335017.3Re-query CCDS DB by Nucleotide ID:ENST00000335524Re-query CCDS DB by Protein ID:ENSP00000335017
Original member Current member NCBI NM_178553.4 NP_848648.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178553.4Link to Protein Sequence:NP_848648.2Re-query CCDS DB by Nucleotide ID:NM_178553Re-query CCDS DB by Protein ID:NP_848648Link to BLAST:NP_848648.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848648.2 412 Q53SZ7 412 100% 0 0

Chromosomal Locations for CCDS 1739.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27137091 27138329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGTTGCCTCAAAACAAGGACCAGGTGCTGCCACAGACCTCAGTGCTCCCTGGGCGCCCCACTTGGGGCT
TCTCACAACTTGTGGACTCCTCTCCTCACAACCTACAGCCTCTCTCTCCCCATCAGGGCCTCCCTCCCTC
TCAACCACCGTTCTCTTCCACTCAGTCCCGTCGTCCCTCCTCCCCTCCACCAGCATCCCCCTCTCCTGGC
TTCCAATTCGGCTCTTGTGACTCAAATTCTGACTTTGCTCCACATCCCTATTCTCCCTCTCTCCCAAGTT
CCCCTACTTTCTTTCACCAGAACTACCTCTCTCTCCCCCGTCCACGTGCATCCTCTCCCTCCAACCACTG
GCTGTACCCCTCTCCCCCTCTGACCCCTTCCTTTTCTCCCTCCCAGCCTCAGAACTCCTCCCTTCCCCAC
TCACCTTGCCAGTCCCCTTCCCACCCCGAGGAACTGCATAGCTCCACACTCACTTCCCCAGGCCCCAGCC
CACCTTCTCATAGGCTCCACTCTAACAGGCAGACATGGCGCTGGCATCAGTACAGGGACACTGGGTCCGG
GTCCCCTGGAGTGGTGGAGAGATGCGTGCCAAGCGAGAAGGATCCTGCACAGTTCAGGGACCCAGGGGCC
CTGGCCCAGGCCCTGGTGGTCCAGCTGGGGCACCGCCGCATCGCACACGACCTGCGGCTACTGCTTTTGC
AGCACCTGTGGCTAGGCAGAACCGGCCAGGCCCCAGTCGTGGAGTATCCTATATGCCTGGTGTGCCTCCG
GCCCCGCAGCCCCTCCTGCCCCCTCCCCAGGTACAGGACTGGACCCCGGCTGCTTGCTTTCCCTCAACTA
CTGCCCTGTGTGCAGGGCCAGGAATCTGGGCCACTCCGGATAGGCATCGGCTTCGGCCTCCGCCTGCCTC
AGGGCCAGGCCAGGGCCTTGCATCTGCTGCCCGAGAAAAGGCCGAAGGAAGCAGGGCCTCAGGGCAAGGC
TACTCAGGCCTGTGGGCATCAATTGCCAGCATCTCAGCCTCCAGCAGCTCAGGCCCGGGCCGACCCAGTC
CCAGGCACACCCTCCCAGACCAGGAGCTTCAGGTCTGCAGGCCTTCAATCACCAAACTCCCCACGATGTT
TCTCCGGGCCTCCACCTCGGGCACCAAAACAGGTCACTACCTCCCTGAAGCCCAGGCCTTGCCCTGGCCC
AAAGAGGCCAGTTTCTCTGGAGCTCATTCTCCAAAAGTCATCAGTCTAG

Translation (412 aa):
MLPQNKDQVLPQTSVLPGRPTWGFSQLVDSSPHNLQPLSPHQGLPPSQPPFSSTQSRRPSSPPPASPSPG
FQFGSCDSNSDFAPHPYSPSLPSSPTFFHQNYLSLPRPRASSPSNHWLYPSPPLTPSFSPSQPQNSSLPH
SPCQSPSHPEELHSSTLTSPGPSPPSHRLHSNRQTWRWHQYRDTGSGSPGVVERCVPSEKDPAQFRDPGA
LAQALVVQLGHRRIAHDLRLLLLQHLWLGRTGQAPVVEYPICLVCLRPRSPSCPLPRYRTGPRLLAFPQL
LPCVQGQESGPLRIGIGFGLRLPQGQARALHLLPEKRPKEAGPQGKATQACGHQLPASQPPAAQARADPV
PGTPSQTRSFRSAGLQSPNSPRCFSGPPPRAPKQVTTSLKPRPCPGPKRPVSLELILQKSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH