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Report for CCDS52462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52462.1 Public Mus musculus 7 Trpm5 23 108 98 CCDS HistoryNCBI Gene:56843Re-query CCDS DB by CCDS ID:52462.1Re-query CCDS DB by GeneID:56843See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009390.9 ENSMUSP00000009390.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009390.9Link to Ensembl Protein Viewer:ENSMUSP00000009390.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000009390Re-query CCDS DB by Protein ID:ENSMUSP00000009390
Original member Current member NCBI NM_020277.2 NP_064673.2 Accepted alive Link to Nucleotide Sequence:NM_020277.2Link to Protein Sequence:NP_064673.2Re-query CCDS DB by Nucleotide ID:NM_020277Re-query CCDS DB by Protein ID:NP_064673Link to BLAST:NP_064673.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064673.2 1158 Q9JJH7-1 1158 100% 0 0

Chromosomal Locations for CCDS 52462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143072348 143072436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143072731 143072797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143073162 143073234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143073969 143074101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143074422 143074603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143075493 143075646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143078292 143078466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143079101 143079233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143079396 143079514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143080116 143080374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143080716 143080808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143080959 143081071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143081747 143081892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143082285 143082408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143082517 143082657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143082723 143083061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143083418 143083536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143084756 143084858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143085118 143085309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143085456 143085520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143086856 143087042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143087701 143087873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143088911 143089091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143089492 143089608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3477 nt):
ATGCAAACAACCCAGAGCTCCTGCCCCGGCAGCCCCCCAGATACTGAGGATGGCTGGGAGCCCATCCTAT
GCAGGGGAGAGATCAACTTCGGAGGGTCTGGGAAGAAGCGAGGCAAGTTTGTGAAGGTGCCAAGCAGTGT
GGCCCCCTCCGTGCTTTTTGAACTCCTGCTCACCGAGTGGCACCTGCCAGCCCCCAACCTGGTGGTGTCC
CTGGTGGGTGAGGAACGACCTTTGGCTATGAAGTCGTGGCTTCGGGATGTCCTGCGCAAGGGGCTGGTGA
AAGCAGCTCAGAGCACAGGTGCCTGGATCCTGACCAGTGCCCTCCACGTGGGCCTGGCCCGCCATGTTGG
ACAAGCTGTACGTGATCACTCTCTGGCTAGCACATCCACCAAGATCCGTGTAGTGGCCATCGGAATGGCC
TCTCTGGATCGAATCCTTCACCGTCAACTTCTAGATGGTGTCCACCAAAAGGAGGATACTCCCATCCACT
ACCCAGCAGATGAGGGCAACATTCAGGGACCCCTCTGCCCCCTGGACAGCAATCTCTCCCACTTCATCCT
TGTGGAGTCAGGCGCCCTTGGGAGTGGGAACGACGGGCTGACAGAGCTGCAGCTGAGCCTGGAGAAGCAC
ATCTCTCAGCAGAGGACAGGTTATGGGGGCACCAGCTGCATCCAGATACCTGTCCTTTGCCTGTTGGTCA
ATGGTGACCCCAACACCCTAGAGAGGATTTCCAGGGCAGTGGAGCAGGCTGCCCCATGGCTGATCCTGGC
AGGTTCTGGTGGCATTGCTGATGTACTCGCTGCCCTGGTGAGCCAGCCTCATCTCCTGGTGCCCCAGGTG
GCTGAGAAGCAGTTCAGAGAGAAATTCCCCAGCGAGTGTTTCTCTTGGGAAGCCATTGTACACTGGACAG
AGCTGTTACAGAACATTGCTGCACACCCCCACCTGCTCACAGTATATGACTTCGAGCAGGAGGGTTCGGA
GGACCTGGACACTGTCATCCTCAAGGCACTTGTGAAAGCCTGCAAGAGCCACAGCCAAGAAGCCCAAGAC
TACCTAGATGAGCTCAAGTTAGCAGTGGCCTGGGATCGCGTGGACATTGCCAAGAGTGAAATCTTCAATG
GGGACGTGGAATGGAAGTCCTGTGACTTGGAAGAGGTGATGACAGATGCCCTCGTGAGCAACAAGCCTGA
CTTTGTCCGCCTCTTTGTGGACAGCGGTGCTGACATGGCCGAGTTCTTGACCTATGGGCGGCTGCAGCAG
CTTTACCATTCTGTGTCCCCCAAGAGCCTCCTCTTTGAACTGCTGCAGCGTAAGCATGAGGAGGGTAGGC
TGACACTGGCCGGCCTGGGTGCCCAGCAGGCTCGGGAGCTGCCCATTGGTCTGCCTGCCTTCTCACTCCA
CGAGGTCTCCCGCGTACTCAAAGACTTCCTGCATGACGCCTGCCGTGGCTTCTACCAGGACGGGCGCAGG
ATGGAGGAGAGAGGGCCACCTAAGCGGCCCGCAGGCCAGAAGTGGCTGCCAGACCTCAGTAGGAAGAGTG
AAGACCCTTGGAGGGACCTGTTCCTCTGGGCTGTGCTGCAGAATCGTTATGAGATGGCCACATACTTCTG
GGCCATGGGCCGGGAGGGTGTGGCTGCTGCTCTGGCTGCCTGCAAGATCATAAAGGAAATGTCCCACCTG
GAGAAAGAGGCAGAGGTGGCCCGCACCATGCGTGAGGCCAAGTATGAGCAGCTGGCCCTGGATCTTTTCT
CAGAGTGCTACGGCAACAGTGAGGACCGTGCCTTTGCCCTGCTGGTGCGAAGGAACCACAGCTGGAGCAG
GACCACGTGCCTGCACCTGGCCACTGAAGCTGATGCCAAGGCCTTCTTTGCCCATGACGGTGTGCAAGCA
TTCCTGACCAAGATCTGGTGGGGAGACATGGCCACAGGCACACCCATCCTACGGCTTCTGGGTGCCTTCA
CCTGCCCAGCCCTCATCTACACAAACCTCATCTCCTTCAGTGAGGATGCCCCGCAGAGGATGGACCTAGA
AGATCTGCAGGAGCCAGACAGCTTGGATATGGAAAAGAGCTTCCTATGCAGCCGGGGTGGCCAATTGGAG
AAGCTAACAGAGGCACCAAGGGCTCCAGGCGATCTAGGCCCACAAGCTGCCTTCCTGCTCACACGGTGGA
GGAAGTTCTGGGGCGCTCCTGTGACTGTGTTCCTGGGGAATGTGGTCATGTACTTCGCATTCCTCTTCCT
GTTCACCTATGTCCTGCTGGTGGACTTCAGGCCACCACCCCAGGGGCCGTCTGGATCCGAGGTTACCCTC
TATTTCTGGGTGTTCACACTGGTGCTGGAGGAAATCCGACAGGGCTTCTTCACAGATGAGGACACGCACC
TGGTGAAGAAATTCACTCTGTATGTGGAAGACAACTGGAACAAGTGTGACATGGTGGCCATCTTCCTGTT
CATTGTGGGAGTCACCTGTAGAATGGTGCCCTCGGTGTTTGAGGCTGGCAGGACCGTTCTGGCCATTGAC
TTCATGGTGTTCACACTTCGGCTCATCCACATCTTTGCTATTCACAAGCAGTTGGGTCCTAAGATCATCA
TTGTAGAGCGAATGATGAAGGATGTCTTCTTTTTCCTCTTCTTCCTGAGCGTATGGCTTGTGGCCTATGG
TGTGACCACTCAGGCCCTGCTGCATCCCCATGATGGCCGTTTGGAGTGGATTTTCCGCCGTGTGCTATAC
AGGCCTTACCTGCAGATCTTTGGGCAAATCCCTCTGGATGAAATTGATGAGGCTCGTGTGAACTGTTCTC
TTCACCCTCTGCTGCTGGAAAGCTCGGCTTCCTGCCCTAATCTCTATGCCAACTGGCTGGTCATTCTCCT
GCTGGTTACCTTCCTGCTTGTCACTAATGTGCTGCTCATGAACCTTCTGATCGCCATGTTCAGCTACACA
TTCCAGGTGGTGCAAGGCAATGCAGACATGTTCTGGAAGTTTCAACGCTACCACCTCATCGTTGAATACC
ATGGAAGACCAGCTCTGGCCCCGCCCTTCATCCTGCTCAGCCACCTGAGCCTGGTGCTCAAGCAGGTCTT
CAGGAAGGAAGCCCAGCATAAGCGACAACATCTGGAGAGAGACTTGCCTGACCCCTTGGACCAGAAGATC
ATTACCTGGGAAACGGTTCAAAAGGAGAACTTCCTGAGTACCATGGAGAAACGGAGGAGGGACAGCGAGG
GGGAGGTGCTGAGGAAAACGGCACACAGAGTGGACTTGATTGCCAAATACATCGGGGGGCTGAGAGAGCA
AGAAAAGAGGATCAAGTGTCTGGAATCACAGGCCAACTACTGTATGCTCCTCTTGTCCTCTATGACGGAT
ACACTGGCTCCAGGAGGCACCTACTCAAGCTCTCAGAACTGTGGTTGCAGGAGTCAGCCAGCCTCTGCTA
GAGACAGGGAGTACCTAGAGTCTGGCTTGCCACCCTCTGACACCTGA

Translation (1158 aa):
MQTTQSSCPGSPPDTEDGWEPILCRGEINFGGSGKKRGKFVKVPSSVAPSVLFELLLTEWHLPAPNLVVS
LVGEERPLAMKSWLRDVLRKGLVKAAQSTGAWILTSALHVGLARHVGQAVRDHSLASTSTKIRVVAIGMA
SLDRILHRQLLDGVHQKEDTPIHYPADEGNIQGPLCPLDSNLSHFILVESGALGSGNDGLTELQLSLEKH
ISQQRTGYGGTSCIQIPVLCLLVNGDPNTLERISRAVEQAAPWLILAGSGGIADVLAALVSQPHLLVPQV
AEKQFREKFPSECFSWEAIVHWTELLQNIAAHPHLLTVYDFEQEGSEDLDTVILKALVKACKSHSQEAQD
YLDELKLAVAWDRVDIAKSEIFNGDVEWKSCDLEEVMTDALVSNKPDFVRLFVDSGADMAEFLTYGRLQQ
LYHSVSPKSLLFELLQRKHEEGRLTLAGLGAQQARELPIGLPAFSLHEVSRVLKDFLHDACRGFYQDGRR
MEERGPPKRPAGQKWLPDLSRKSEDPWRDLFLWAVLQNRYEMATYFWAMGREGVAAALAACKIIKEMSHL
EKEAEVARTMREAKYEQLALDLFSECYGNSEDRAFALLVRRNHSWSRTTCLHLATEADAKAFFAHDGVQA
FLTKIWWGDMATGTPILRLLGAFTCPALIYTNLISFSEDAPQRMDLEDLQEPDSLDMEKSFLCSRGGQLE
KLTEAPRAPGDLGPQAAFLLTRWRKFWGAPVTVFLGNVVMYFAFLFLFTYVLLVDFRPPPQGPSGSEVTL
YFWVFTLVLEEIRQGFFTDEDTHLVKKFTLYVEDNWNKCDMVAIFLFIVGVTCRMVPSVFEAGRTVLAID
FMVFTLRLIHIFAIHKQLGPKIIIVERMMKDVFFFLFFLSVWLVAYGVTTQALLHPHDGRLEWIFRRVLY
RPYLQIFGQIPLDEIDEARVNCSLHPLLLESSASCPNLYANWLVILLLVTFLLVTNVLLMNLLIAMFSYT
FQVVQGNADMFWKFQRYHLIVEYHGRPALAPPFILLSHLSLVLKQVFRKEAQHKRQHLERDLPDPLDQKI
ITWETVQKENFLSTMEKRRRDSEGEVLRKTAHRVDLIAKYIGGLREQEKRIKCLESQANYCMLLLSSMTD
TLAPGGTYSSSQNCGCRSQPASARDREYLESGLPPSDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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