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Report for CCDS37958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37958.1 Public Mus musculus 19 Cstf2t 23 108 98 CCDS HistoryNCBI Gene:83410Re-query CCDS DB by CCDS ID:37958.1Re-query CCDS DB by GeneID:83410See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066039.7 ENSMUSP00000093831.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066039.7Link to Ensembl Protein Viewer:ENSMUSP00000093831.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066039Re-query CCDS DB by Protein ID:ENSMUSP00000093831
Original member Current member NCBI NM_031249.2 NP_112539.2 Accepted alive Link to Nucleotide Sequence:NM_031249.2Link to Protein Sequence:NP_112539.2Re-query CCDS DB by Nucleotide ID:NM_031249Re-query CCDS DB by Protein ID:NP_112539Link to BLAST:NP_112539.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112539.2 632 Q8C7E9 632 100% 0 0

Chromosomal Locations for CCDS 37958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 31083066 31084964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGTCGAGTTTGGCGGTCAGAGACCCAGCCATGGATCGATCGCTGCGTTCGGTGTTCGTGGGGAACATTC
CGTATGAGGCGACGGAGGAGCAGTTAAAGGACATTTTCTCAGAGGTTGGTTCAGTTGTCAGTTTCCGTCT
CGTCTACGATAGAGAGACTGGGAAGCCCAAGGGTTATGGCTTCTGCGAGTACCAAGACCAGGAGACTGCG
CTCAGTGCCATGCGAAACCTCAATGGGCGAGAGTTTAGTGGGAGAGCGCTTCGGGTGGACAATGCCGCCA
GCGAAAAGAACAAGGAGGAGTTAAAGAGCTTAGGCCCGGCGGCCCCCATCATTGACTCCCCCTATGGGGA
CCCTATCGACCCAGAAGATGCTCCAGAATCGATTACTAGAGCAGTCGCCAGCTTGCCCCCAGAGCAGATG
TTTGAGCTCATGAAGCAGATGAAGTTGTGTGTCCAGAACAGTCACCAGGAAGCTCGAAACATGCTACTTC
AGAACCCACAGTTGGCGTATGCTTTGCTGCAGGCACAAGTGGTGATGAGAATCATGGATCCAGAGATTGC
ACTGAAAATTTTGCATCGTAAGATACATGTCACACCACTGATCCCAGGCAAATCTCAGCCGGTCTCTGGG
CCTGGCCCTGGTGGGCCTGGGCCTAGTGGGCCTGGCGGCCCTGGCCCCGGCCCTGCCCCTGGCCTCTGCC
CGGGACCTAACGTCATGTTGAACCAACAGAATCCTCCTGCCCCTCAGCCTCAGCATCTGCCAAGAAGACC
TGTGAAGGACATTCCACCTCTGATGCAGACCTCTATCCAGGGAGGAATTCCAGCTCCGGGGCCAATACCA
GCTGCAGTTCCTGGACCTGGACCTGGTTCCTTAACTCCAGGAGGAGCAATGCAGCCACAAGTTGGCATGC
CAGTGGTTGGTCCAGTGCCCCTGGAGCGAGGACAGATGCAGATATCAGATCCTAGACCTCCGATGCCTCG
TGGACCCATGCCTTCTGGTGGCATACCTCCTCGAGGACTACTGGGAGATGCTCCAAATGACCCACGTGGA
GGGACTTTGCTCTCAGTGACTGGAGAAGTAGAGCCCAGGGGCTATATGGGACCACCCCATCAGGGTCCTC
CAATGCATCATGGTCATGACAACCGTGGCCCTGCCTCACATGATATGAGAGGAGGACCATTGGCAGCAGA
TCCCAGAATGCTAATTGGAGAGCCCAGAGGTCCCATGATAGATCAGAGAGGTCTACCTATGGATGGTAGA
GGAGGTAGAGAATCTCGAGGGATGGAGACTCGGCCCATGGAAACTGAGGTCTTGGAGCCACGAGGAATGG
AGAGAAGGATGGAGACCTGCGCGATGGAAACCAGAGGCATGGATGCAAGAGGACTAGAGATGAGGGGCCC
TGGCCCTAGTTCCAGAGGTCCGATGACTGGTGGAATCCAGGGTCCTGGCCCTATTAATATGGGGGCAGGT
GGCCCTCAGGGACCTAGACAGGTTCCAAATATTGCAGGAGTGGGAAATCCTGGAGGTACCATGCAGGGGG
CAGGTATACAAGGAGGAGGGATGCAGGGAGCAGGTATGCAAGGAGGAGGGATGCAAGGAGCAGGCATGCA
AGGAGGAGGGATGCAGGGAGCTGGCATGCAAGCAGGGATGCAGGGAGCTAGCATGCAAGGAGGGATGCAG
GGAGCTGGCATGCAAGGAGCCAGTAAGCAAGGTGGAGGCCAGCCTAGCAGTTTTAGCCCTGGGCAAAGCC
AGGTAACTCCACAAGATCAAGAAAAAGCAGCTTTGATCATGCAGGTTCTCCAGCTGACTGCGGATCAGAT
TGCCATGCTGCCTCCCGAACAAAGGCAGAGCATTTTGATTTTAAAGGAACAAATCCAGAAATCCACTGGG
GCTTCTTGA

Translation (632 aa):
MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETA
LSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQM
FELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHRKIHVTPLIPGKSQPVSG
PGPGGPGPSGPGGPGPGPAPGLCPGPNVMLNQQNPPAPQPQHLPRRPVKDIPPLMQTSIQGGIPAPGPIP
AAVPGPGPGSLTPGGAMQPQVGMPVVGPVPLERGQMQISDPRPPMPRGPMPSGGIPPRGLLGDAPNDPRG
GTLLSVTGEVEPRGYMGPPHQGPPMHHGHDNRGPASHDMRGGPLAADPRMLIGEPRGPMIDQRGLPMDGR
GGRESRGMETRPMETEVLEPRGMERRMETCAMETRGMDARGLEMRGPGPSSRGPMTGGIQGPGPINMGAG
GPQGPRQVPNIAGVGNPGGTMQGAGIQGGGMQGAGMQGGGMQGAGMQGGGMQGAGMQAGMQGASMQGGMQ
GAGMQGASKQGGGQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTG
AS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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