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Report for CCDS43943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43943.1 Public Homo sapiens X GAGE12C 24 110 108 CCDS HistoryNCBI Gene:729422Re-query CCDS DB by CCDS ID:43943.1Re-query CCDS DB by GeneID:729422See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420398.3 ENSP00000397103.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000420398.3Link to Ensembl Protein Viewer:ENSP00000397103.2Re-query CCDS DB by Nucleotide ID:ENST00000420398Re-query CCDS DB by Protein ID:ENSP00000397103
Original member Current member NCBI NM_001098408.3 NP_001091878.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098408.3Link to Protein Sequence:NP_001091878.1Re-query CCDS DB by Nucleotide ID:NM_001098408Re-query CCDS DB by Protein ID:NP_001091878Link to BLAST:NP_001091878.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091878.1 117 A1L429 117 100% 0 0

Chromosomal Locations for CCDS 43943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49533332 49533415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49533881 49534001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49536824 49536949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49539425 49539447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGAGTTGGCGAGGAAGATCGACCTATTATTGGCCTAGACCAAGGCGCTATGTACAGCCTCCTGAAATGA
TTGGGCCTATGCGGCCCGAGCAGTTCAGTGATGAAGTGGAACCAGCAACACCTGAAGAAGGGGAACCAGC
AACTCAATGTCAGGATCCTGCAGCTGCTCAGGAGGGAGAGGATGAGGGAGCATCTGCAGGTCAAGGGCCG
AAGCCTGAAGCTCATAGCCAGGAACAGGGTCACCCACAGACTGGGTGTGAGTGTGAAGATGGTCCTGATG
GGCAGGAGATGGACCCGCCAAATCCAGAGGAGGTGAAAACGCCTGAAGAAGGTGAAAAGCAATCACAGTG
TTAA

Translation (117 aa):
MSWRGRSTYYWPRPRRYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQCQDPAAAQEGEDEGASAGQGP
KPEAHSQEQGHPQTGCECEDGPDGQEMDPPNPEEVKTPEEGEKQSQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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