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Report for CCDS29180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29180.1 Public Mus musculus 18 Pcdhb14 23 108 98 CCDS HistoryNCBI Gene:93885Re-query CCDS DB by CCDS ID:29180.1Re-query CCDS DB by GeneID:93885See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 29180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052387.4 ENSMUSP00000054111.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052387.4Link to Ensembl Protein Viewer:ENSMUSP00000054111.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000052387Re-query CCDS DB by Protein ID:ENSMUSP00000054111
Original member Current member NCBI NM_053139.3 NP_444369.3 Accepted alive Link to Nucleotide Sequence:NM_053139.3Link to Protein Sequence:NP_444369.3Re-query CCDS DB by Nucleotide ID:NM_053139Re-query CCDS DB by Protein ID:NP_444369Link to BLAST:NP_444369.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444369.3 796 Q6PB90 796 100% 0 0

Chromosomal Locations for CCDS 29180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37447843 37450233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGGAGACATCACTCCACAAGGCACCACAGAAAAGGCAAGTGACCGCCATTATCTTTCTGTTACTGCTGT
GGGAGGCAGGTAGTGCAACCATCACGTATTCCGTTCTAGAGGAGACAGACAGGGGCTCTTTGGTGGGGAA
CCTAGCAAAAGATTTGGGGTTGAGTTTAAGGGAGTTGATTACCAGGGGCGCCCAGATTCTTTCCAAAGGG
AACAAACAGCTCCTGCAGCTGGAGCAGAAGAGTGGAAATTTGCTCCTGAAAGAAAAATTGGATCGAGAGG
AGTTATGCGGGAGCACCAATCCGTGTATCCTACATTTCCAGGTGTTACTAAAAAGTCCAGTGCAATTTAT
TCAAGGGGAAATACAGCTTCAAGATGTAAATGATCATGCCCCAGAATTCATGGAAGATGAAATTCTCCTT
AAAATTTTGGAAAGCAGCCTTCCAGGTGCCGTGTTTCCATTGAAAATAGCTCAAGATTTGGATGTGGGGA
GCAACACGGTTCAAAACTATACAATCAGCACCAACGCCCATTTCCACCTTCTCACCCGCAATCACAGCGA
CGGCAGGAAATATCCAGAGCTCGTGCTAGACAAAGCACTGGACCGGGAGGAACAGGCACAGATTAGATTA
ACACTCACGGCTATGGACAGTGGGTCACCTCCCAAGACTGGGACTACCCAGGTTGTCATTGTGGTCCTGG
ACATTAATGACAATGCCCCTGAATTTGCCCAAGGGCTCTATGAGGTGCAAGTTCAAGAGAACAGTCCTGT
GGGCTCCCTTGTCCTCACTGTATCCGCAAGAGATTTAGATGCTGGGACACACGGAGAGCTCTCCTATTCG
CTTTTTCAATCATCAAATCAAGTTCTACAGGCTTTTGAAGTAAATACAGACACCGGAGAAATTAGAGTAA
GAAAACTGTTGGACTTTGAGGAAATTCAGTCTTACCGCATGGAAATCGAGGCCTCTGATGGGGGAGGCCT
TTCAGGAAAATGCACAGTAGTAATACATGTGATGGATGTAAATGACAACGCTCCTGAACTCACCATGTCA
GTACTTATCAGCGAAATTCCAGAAAACTCCCCTGAAACTATAGTCGCGATTTTTGGAATTTCAGATCCAG
ACTCTGGAGACAATGGAAAAATGGTGTGCTCCGTCCAAGACCGTCTTCCTTTCCTCTTGAAACCTAATGA
AGAAAACTTCTACACGTTGGTAACTGAAAGAGCACTGGACAGAGAGAGCAGAGCTGAGTACAACATCACC
ATTACGGTCTCAGACATGGGCACACCCAGGCTCACAACCCAGCACACCATAACAGTGCAGGTGTCTGACA
TCAATGACAACGCCCCTGCCTTCACTCACACCTCCTACACCATGTTTGTCCGAGAAAACAACAGCCCTGC
ATTGCACATAGGCACCATCAGCGCCACAGACTCAGACTCAGGCTCCAATGCCCACATCACCTACTCGCTG
CTGCCTCCCCATGACCCACAACTGGCCCTCAACTCGCTCATCTCCATCAACGCAGACAATGGGCAGCTGT
TTGCGCTCAGGGCGCTGGACTATGAGGCCCTGCAGGCCTTTGAGTTCCATGTGGGCGCCACAGATGGAGG
CTCTCCCGCGCTCAGCAGCCAGGCGCTGGTGCGCGTGGTGGTGCTGGACGACAATGACAATGCGCCCTTC
GTGCTCTACCCGATGCAGAACGCTTCTGCGCCTTGCACTGAGCTGCTGCCCAGGGCAGCGGAGCCCGGAT
ATCTGGTCACCAAGGTGGTGGCTGTGGACCGCGACTCTGGACAGAATGCCTGGCTGTCATTCCAACTGCT
CAAGACCACGGAGCCTGGACTGTTCAGTGTGTGGGCGCACAATGGCGAGGTGCGCACCACCAGGCTGCTG
AGCGAGCGCGATGTGCCCAAGCACAGGCTGCTCCTGCTGGTCAAGGACAATGGAGAACCTCCACACTCTG
CCAGTGTCACACTGCATGTATTGCTGGTCGATGGTTTCTCTCAGCCCTACCTTCCTCTGCCAGAGGTGGC
GCGCGACCCTGCACAAGAAGATGTACTAACACTCTACCTGGTCATTGCCTTGGCCTCTGTGTCTTCTCTC
TTCCTGGTGTCTGTGCTGCTGTTTGTGGGAGTAAGACTGTGCAGGAAGGCTGGGGAGACTTCTCTGGGTG
GCTGCTCTGTGCCTGAGGGACACTTTCCTGGCCACCTGGTGGATGTTAGCGGAACTGGGACCCTGTCCCA
GAGCTACCAGTATGAGGTGTGTCTGACGGGAGGTACTGGAACAAATGAGTTTAAATTTCTTAAACCAGTA
CTTCCCAACTTTTTGAATGAAGGAGGTTACAGAAACACGGAGGAGAATTCCAATTTTAGGGATTCTTTGG
GGTTTAGCTAA

Translation (796 aa):
METSLHKAPQKRQVTAIIFLLLLWEAGSATITYSVLEETDRGSLVGNLAKDLGLSLRELITRGAQILSKG
NKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKSPVQFIQGEIQLQDVNDHAPEFMEDEILL
KILESSLPGAVFPLKIAQDLDVGSNTVQNYTISTNAHFHLLTRNHSDGRKYPELVLDKALDREEQAQIRL
TLTAMDSGSPPKTGTTQVVIVVLDINDNAPEFAQGLYEVQVQENSPVGSLVLTVSARDLDAGTHGELSYS
LFQSSNQVLQAFEVNTDTGEIRVRKLLDFEEIQSYRMEIEASDGGGLSGKCTVVIHVMDVNDNAPELTMS
VLISEIPENSPETIVAIFGISDPDSGDNGKMVCSVQDRLPFLLKPNEENFYTLVTERALDRESRAEYNIT
ITVSDMGTPRLTTQHTITVQVSDINDNAPAFTHTSYTMFVRENNSPALHIGTISATDSDSGSNAHITYSL
LPPHDPQLALNSLISINADNGQLFALRALDYEALQAFEFHVGATDGGSPALSSQALVRVVVLDDNDNAPF
VLYPMQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKTTEPGLFSVWAHNGEVRTTRLL
SERDVPKHRLLLLVKDNGEPPHSASVTLHVLLVDGFSQPYLPLPEVARDPAQEDVLTLYLVIALASVSSL
FLVSVLLFVGVRLCRKAGETSLGGCSVPEGHFPGHLVDVSGTGTLSQSYQYEVCLTGGTGTNEFKFLKPV
LPNFLNEGGYRNTEENSNFRDSLGFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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