NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29179.1 Public Mus musculus 18 Pcdhb13 23 108 98 CCDS HistoryNCBI Gene:93884Re-query CCDS DB by CCDS ID:29179.1Re-query CCDS DB by GeneID:93884See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 29179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056915.2 ENSMUSP00000061087.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056915.2Link to Ensembl Protein Viewer:ENSMUSP00000061087.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000056915Re-query CCDS DB by Protein ID:ENSMUSP00000061087
Original member Current member NCBI NM_053138.2 NP_444368.1 Accepted alive Link to Nucleotide Sequence:NM_053138.2Link to Protein Sequence:NP_444368.1Re-query CCDS DB by Nucleotide ID:NM_053138Re-query CCDS DB by Protein ID:NP_444368Link to BLAST:NP_444368.1

Chromosomal Locations for CCDS 29179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37442571 37444961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGTCACACGCAAAAATGTGGTGCAAGACAAGGCAAGTGATGGTTTTGATTACATCGATGCTTTTGTGGG
AGGTGGGTTCAGGATCAATTCAGTATGCCATGCTGGAGGAGACAGAAAGTGGCACGTTTGTGGCCAACCT
GACTAAGCACTTGGGGCTAAGGGTGGGAGAACTGGCTGCTCGGGATGCTAGAGTGGTTTTCAAGGGGAAC
AGACAGTATTTGCAGCTTGACCCTCAGACCCAGGATTTGATGCTAAATGAAAACCTGGACCGGGAGGAAC
TGTGTGGCTCCACAGAACCTTGTGTGCTGTCTTTCCGGGTGTTACTAAAAAATCCTTTGCAGTTTTATCA
AGCTGAACTGAGAGTTATAGATATAAATGACCACGCCCCAGAGTTTCCTGCCAGAGAAATGCTCCTTAAA
ATATCAGAAATAGCTCCACCTGGAAAGATATTCCCTTTGAAAATGGCACAGGACTTAGACACTGGCAGCC
ACAGCATTCAGAGCTACACTGTCAGTGATAACCCTCACTTCCACGTGCTCACTCGCAATCGCAGCGATGG
CAAGAAGTTCCCTGAGCTAGTGTTGGACAAGGCTTTGGACCGTGAGAAGCAAGACCAGCTCAGACTAAAG
CTCACTGCGGTGGATGGTGGGTCTCCGCCCAGGTCAGGGACCACAGAAATTCAAATATTAGTCTTAGATA
TAAATGACAACACGCCGGAATTTGCTCAGGAGCTCTATGAGGTCCAAGTTCCTGAGAACAGTCCCATTGG
CTCACTGCTTATTACAGTCTCAGCAAGAGATTTAGATGCAGGACCCTTTGGGGAGGTGTCTTATGGACTG
TCTCAAGATGATGATGTTAACGAGCCTTTTGAAATAAACACAAAGACAGGAGAAATTCGACTGAAAAGCA
CGTTGGATTTTGAAGCATTCCAGTCTTACCATGTGGATGTCGAGGCCCTAGATGGTGGCGGGCTAACAGG
AAAATGCTCCTTAGTCGTCCAAGTATTGGACGTGAATGATAACGCTCCAGAAGTGATCCTATCCTCACTC
AACAGCCCCATCCCTGAAAATTTGCCAGGTATCATAGTGGCAGTATTCAGTGTTTCAGATGCGGACTCTG
GAAATAACCAGCAGGTTATGTGTTCCATAGATGACAATCTTCCGTTTCTTCTAAGACCATCTATGGAGAA
TTTCTATACTCTGGAAACAGATGGGGCACTAGACAGAGAGAGCAGATCTGAATACAATATTACCATCACA
GTCACCGACATGGGCACACCCAGGCTCACAACCCAGCACAACATAACAGTGCAGGTGTCTGACATCAACG
ACAATGCCCCTGCCTTCACCCAAACCTCCTACACCTTGTTCGTCCACGAGAACAACAGCCCCGCCCTGCA
CATAGGCACCATCAGTGCCACAGACTCAGATTCAGGCTCCAATGCCCACATCACCTACTCACTGCTGCTG
CCTCAGGACAAGCAGCTGACCCTCACCTCGCTGGTCTCCATCAACGCAGACAACGGGCAACTGTTTGCGC
TCAGGGCTCTGGACTATGAGGCCCTGCAGGCCTTCGAGTTCCGCGTAGACGCCACAGACCAAGGTTCTCC
AGCGCTCAGCAGCCAAGTGCTGGTGCGCGTGGTGGTGCTGGACGACAATGACAATGCGCCCTTCGTGCTC
TACCCGATGCAGAATGCCTCTGCACCCTGCACAGAGCTGCTTCCCAGGGCTGCAGAGCCCGGATACCTGG
TCACCAAGGTGGTGGCAGTTGACCGCGACTCTGGCCAGAATGCCTGGCTGTCATTCCAACTGTTCAAGGC
CACGGAGCCTGGACTGTTTAGTGTGTGGGCGCACAATGGCGAAGTGCGCACCACCAGGCTGCTGAGCGAG
CGCGATGTGCCCAAGCACAGGCTGCTGCTGCTGGTCAAGGACAATGGAGAACCTCCACGCTCTGCCAGTG
TCACTCTTCATGTGCTGCTGGTGGATGGCTTCTCTCAGCCCTACCTGCCTCTGCCAGAGGTGGCGCAGGA
CTCCACAGAGGATGCTGAAGATGCGCTCACGTTATACCTGGTTATTGCCTTAGCATCTGTATCTTCGCTC
TTCCTCTTGTCTGTGGTGCTGTTTGTGGGGGTGAGGCTGTGCAAGAAGTTCAGAGCGGCCTCTCTCGGTG
GCTACTCTGTGCCTGAGGGACACTTTCCTGGCCATCTGGTGGATGTCAGCGGCGCTGGGACTCTTTCCCA
GAGCTACCAGTATGAGGTGTGTCTGAGAGGAGACACTGGGACTGGTGAGTTCAAATTGCGAAAGGCAATT
AATCCCCACTTTCCTTCTGTGCCCTCTGAGAGGAACACAGAGGAAAGTCCTACTCTTCGGAATAGCTTCT
TATTCATCTAA

Translation (796 aa):
MSHAKMWCKTRQVMVLITSMLLWEVGSGSIQYAMLEETESGTFVANLTKHLGLRVGELAARDARVVFKGN
RQYLQLDPQTQDLMLNENLDREELCGSTEPCVLSFRVLLKNPLQFYQAELRVIDINDHAPEFPAREMLLK
ISEIAPPGKIFPLKMAQDLDTGSHSIQSYTVSDNPHFHVLTRNRSDGKKFPELVLDKALDREKQDQLRLK
LTAVDGGSPPRSGTTEIQILVLDINDNTPEFAQELYEVQVPENSPIGSLLITVSARDLDAGPFGEVSYGL
SQDDDVNEPFEINTKTGEIRLKSTLDFEAFQSYHVDVEALDGGGLTGKCSLVVQVLDVNDNAPEVILSSL
NSPIPENLPGIIVAVFSVSDADSGNNQQVMCSIDDNLPFLLRPSMENFYTLETDGALDRESRSEYNITIT
VTDMGTPRLTTQHNITVQVSDINDNAPAFTQTSYTLFVHENNSPALHIGTISATDSDSGSNAHITYSLLL
PQDKQLTLTSLVSINADNGQLFALRALDYEALQAFEFRVDATDQGSPALSSQVLVRVVVLDDNDNAPFVL
YPMQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLFKATEPGLFSVWAHNGEVRTTRLLSE
RDVPKHRLLLLVKDNGEPPRSASVTLHVLLVDGFSQPYLPLPEVAQDSTEDAEDALTLYLVIALASVSSL
FLLSVVLFVGVRLCKKFRAASLGGYSVPEGHFPGHLVDVSGAGTLSQSYQYEVCLRGDTGTGEFKLRKAI
NPHFPSVPSERNTEESPTLRNSFLFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH