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Report for CCDS48116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48116.1 Public Homo sapiens X MAGED4 24 110 108 CCDS HistoryNCBI Gene:728239Re-query CCDS DB by CCDS ID:48116.1Re-query CCDS DB by GeneID:728239See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375626.7 ENSP00000364777.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375626.7Link to Ensembl Protein Viewer:ENSP00000364777.3Re-query CCDS DB by Nucleotide ID:ENST00000375626Re-query CCDS DB by Protein ID:ENSP00000364777
Original member Current member NCBI NM_001098800.3 NP_001092270.1 Accepted alive Link to Nucleotide Sequence:NM_001098800.3Link to Protein Sequence:NP_001092270.1Re-query CCDS DB by Nucleotide ID:NM_001098800Re-query CCDS DB by Protein ID:NP_001092270Link to BLAST:NP_001092270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092270.1 739 Q96JG8-2 739 100% 0 0

Chromosomal Locations for CCDS 48116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 52185923 52186132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52186397 52187230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52187642 52187845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52187949 52188012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52188206 52188285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52188674 52188765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52189387 52189466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52189552 52189594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52189986 52190048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52190994 52191108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 52191431 52191865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGGCTGAGGGAAGCTTCAGCGTGCAATCGGAAAGCTACAGTGTTGAAGACATGGATGAGGGTAGCGACG
AAGTCGGGGAGGAAGAGATGGTTGAAGGCAACGACTATGAAGAATTCGGTGCGTTTGGTGGCTATGGCAC
CCTCACCAGCTTTGACATCCATATCCTCAGAGCCTTCGGAAGCTTGGGTCCAGGCCTTCGCATCTTATCG
AATGAGCCCTGGGAACTGGAAAACCCTGTGCTGGCCCAGACCCTGGTGGAGGCATTGCAGCTGGATCCGG
AAACACTTGCCAATGAGACGGCCGCCCGTGCTGCCAACGTAGCCCGCGCCGCCGCCTCCAACCGTGCGGC
TCGGGCCGCTGCCGCCGCTGCCCGTACCGCCTTCAGTCAGGTGGTCGCTAGCCACCGGGTGGCCACGCCG
CAGGTCTCAGGAGAGGATACCCAGCCCACGACCTACGCCGCCGAGGCTCAGGGGCCCACCCCTGAGCCAC
CCCTTGCTTCTCCGCAGACCTCCCAGATGTTAGTCACCAGTAAGATGGCTGCCCCCGAGGCTCCGGCAAC
CTCCGCACAGTCCCAGACAGGCTCCCCGGCCCAGGAGGCTGCTACTGAGGGCCCTAGTAGCGCCTGTGCT
TTCTCTCAGGCTCCGTGTGCCAGGGAGGTGGACGCCAACCGGCCCAGCACAGCCTTCCTGGGCCAGAATG
ATGTCTTCGATTTCACTCAGCCGGCAGGTGTCAGTGGCATGGCCTTCCCGCGCCCCAAGAGACCTGCCCC
AGCCCAAGAGGCTGCCACAGAGGGCCCCAGTGCTGCCTCTGGTGTGCCCCAGACGGGACCTGGCAGGGAG
GTGGCAGCCACCCGGCCCAAGACCACCAAGTCGGGGAAGGCGCTGGCCAAGACTCGGTGGGTGGAGCCTC
AGAATGTTGTGGCAGCAGCTGCTGCCAAGGCCAAGATGGCCACGAGCATCCCTGAGCCGGAGGGTGCAGC
TGCTGCCACTGCTCAGCACAGTGCTGAGCCCTGGGCCAGGATGGGAGGCAAGAGGACCAAGAAGTCCAAG
CACCTGGATGATGAGTATGAGAGCAGCGAGGAGGAGAGAGAGACTCCCGCGGTCCCACCCACCTGGAGAG
CATCACAGCCCTCATTGACGGTGCGGGCTCAGTTGGCCCCTCGGCCCCCGATGGCCCCGAGGTCCCAGAT
ACCCTCAAGGCACGTACTGTGCCTGCCCCCCCGCAACGTGACCCTTCTGCAGGAGAGGGCAAATAAGTTG
GTGAAATACCTGATGATTAAGGACTACAAGAAGATCCCCATCAAGCGCGCAGACATGCTGAAGGATGTCA
TCAGAGAATATGATGAACATTTCCCTGAGATCATTGAACGAGCAACGTACACCCTGGAAAAGAAGTTTGG
GATCCACCTGAAGGAGATCGACAAGGAAGAACACCTGTATATTCTTGTCTGCACACGGGACTCCTCAGCT
CGCCTCCTTGGAAAAACCAAGGACACTCCCAGGCTGAGTCTCCTCTTGGTGATTCTGGGCGTCATCTTCA
TGAATGGCAACCGTGCCAGCGAGGCTGTCCTCTGGGAGGCACTACGCAAGATGGGACTGCGCCCTGGGGT
GAGGCACCCATTCCTCGGCGATCTGAGGAAGCTCATCACAGATGACTTTGTGAAGCAGAAGTACCTGGAA
TACAAGAAGATCCCCAACAGCAACCCACCTGAGTATGAATTCCTCTGGGGCCTGCGAGCCCGCCATGAGA
CCAGCAAGATGAGGGTCCTGAGATTCATCGCCCAGAATCAGAACCGAGACCCCCGGGAATGGAAGGCTCA
TTTCTTGGAGGCTGTGGATGATGCTTTCAAGACAATGGATGTGGATATGGCCGAGGAACATGCCAGGGCC
CAGATGAGGGCCCAGATGAATATCGGGGATGAAGCGCTGATTGGACGGTGGAGCTGGGATGACATACAAG
TCGAGCTCCTGACCTGGGATGAGGACGGAGATTTTGGCGATGCCTGGGCCAGGATCCCCTTTGCTTTCTG
GGCCAGATACCATCAGTACATTCTGAATAGCAACCGTGCCAACAGGAGGGCCACGTGGAGAGCTGGCGTC
AGCAGTGGCACCAATGGAGGGGCCAGCACCAGCGTCCTAGATGGCCCCAGCACCAGCTCCACCATCCGGA
CCAGAAATGCTGCCAGAGCTGGCGCCAGCTTCTTCTCCTGGATCCAGTAA

Translation (739 aa):
MAEGSFSVQSESYSVEDMDEGSDEVGEEEMVEGNDYEEFGAFGGYGTLTSFDIHILRAFGSLGPGLRILS
NEPWELENPVLAQTLVEALQLDPETLANETAARAANVARAAASNRAARAAAAAARTAFSQVVASHRVATP
QVSGEDTQPTTYAAEAQGPTPEPPLASPQTSQMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACA
FSQAPCAREVDANRPSTAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAATEGPSAASGVPQTGPGRE
VAATRPKTTKSGKALAKTRWVEPQNVVAAAAAKAKMATSIPEPEGAAAATAQHSAEPWARMGGKRTKKSK
HLDDEYESSEEERETPAVPPTWRASQPSLTVRAQLAPRPPMAPRSQIPSRHVLCLPPRNVTLLQERANKL
VKYLMIKDYKKIPIKRADMLKDVIREYDEHFPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSA
RLLGKTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKMGLRPGVRHPFLGDLRKLITDDFVKQKYLE
YKKIPNSNPPEYEFLWGLRARHETSKMRVLRFIAQNQNRDPREWKAHFLEAVDDAFKTMDVDMAEEHARA
QMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWARIPFAFWARYHQYILNSNRANRRATWRAGV
SSGTNGGASTSVLDGPSTSSTIRTRNAARAGASFFSWIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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