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Report for CCDS33562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33562.1 Public Homo sapiens 21 IGSF5 24 110 108 CCDS HistoryNCBI Gene:150084Re-query CCDS DB by CCDS ID:33562.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33562.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380588.5 ENSP00000369962.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380588.5Link to Ensembl Protein Viewer:ENSP00000369962.4Re-query CCDS DB by Nucleotide ID:ENST00000380588Re-query CCDS DB by Protein ID:ENSP00000369962
Original member Current member NCBI NM_001080444.2 NP_001073913.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080444.2Link to Protein Sequence:NP_001073913.1Re-query CCDS DB by Nucleotide ID:NM_001080444Re-query CCDS DB by Protein ID:NP_001073913Link to BLAST:NP_001073913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073913.1 407 Q9NSI5 407 100% 0 0

Chromosomal Locations for CCDS 33562.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39745510 39745526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39746216 39746298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39765535 39765852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39770916 39771215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39779090 39779305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39788167 39788188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39792008 39792099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39793534 39793613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39801262 39801357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGGTCAGAAGGAAAGGAGCACAGCAGATACTCTGCCGGATCTGGAGGAATGGAAGTCAGCGGCGGGTC
TGCGATGGTGGCAAACAGCAGTGGTGGACGGTTCTGGGTCTGGTAATGAAGTCATAGAAGGCCCCCAAAA
TGCAAGAGTCCTGAAGGGCTCCCAGGCTCGCTTCAACTGCACCGTCTCCCAGGGCTGGAAGCTCATCATG
TGGGCTCTCAGTGACATGGTGGTGCTAAGCGTCAGGCCCATGGAGCCCATCATCACCAATGACCGCTTCA
CCTCTCAGAGGTACGACCAGGGCGGGAACTTCACCTCGGAGATGATCATCCACAATGTGGAGCCCAGTGA
TTCGGGGAACATCAGATGCAGCCTCCAGAACAGTCGCCTGCATGGATCTGCTTACCTTACCGTCCAAGTT
ATGGGAGAGCTGTTCATTCCCAGTGTTAATCTTGTAGTCGCTGAGAATGAACCTTGTGAAGTTACTTGTC
TACCCTCACACTGGACCCGGCTCCCGGATATTTCCTGGGAGCTCGGTCTCCTGGTCAGCCATTCAAGCTA
TTATTTTGTTCCGGAGCCCAGCGACCTTCAAAGTGCAGTGAGCATCCTGGCTCTGACCCCACAGAGCAAT
GGGACTTTGACTTGCGTGGCTACCTGGAAGAGCCTGAAGGCCCGCAAGTCTGCAACTGTAAATCTCACTG
TGATTCGGTGTCCCCAAGACACTGGAGGTGGTATTAATATTCCAGGTGTATTATCAAGTTTACCGAGTTT
AGGTTTTTCATTGCCTACTTGGGGCAAAGTTGGACTTGGACTAGCAGGCACCATGCTTCTGACGCCGACG
TGTACTCTTACAATACGCTGCTGCTGCTGCCGCCGTCGTTGTTGTGGCTGCAACTGCTGCTGCCGTTGTT
GTTTCTGCTGTAGAAGAAAAAGAGGATTTCGTATTCAATTTCAAAAGAAATCTGAAAAAGAGAAGACAAA
CAAAGAAACTGAGACAGAAAGTGGAAATGAAAACTCCGGCTACAATTCAGATGAACAAAAGACCACAGAC
ACCGCTTCTCTCCCTCCCAAATCCTGTGAATCCAGTGATCCTGAACAAAGAAACAGTAGCTGTGGCCCTC
CTCACCAGCGGGCTGATCAACGTCCACCCAGGCCAGCAAGTCATCCACAGGCTTCTTTTAATCTGGCCAG
TCCTGAGAAGGTCAGTAATACAACTGTAGTATAG

Translation (407 aa):
MGQKERSTADTLPDLEEWKSAAGLRWWQTAVVDGSGSGNEVIEGPQNARVLKGSQARFNCTVSQGWKLIM
WALSDMVVLSVRPMEPIITNDRFTSQRYDQGGNFTSEMIIHNVEPSDSGNIRCSLQNSRLHGSAYLTVQV
MGELFIPSVNLVVAENEPCEVTCLPSHWTRLPDISWELGLLVSHSSYYFVPEPSDLQSAVSILALTPQSN
GTLTCVATWKSLKARKSATVNLTVIRCPQDTGGGINIPGVLSSLPSLGFSLPTWGKVGLGLAGTMLLTPT
CTLTIRCCCCRRRCCGCNCCCRCCFCCRRKRGFRIQFQKKSEKEKTNKETETESGNENSGYNSDEQKTTD
TASLPPKSCESSDPEQRNSSCGPPHQRADQRPPRPASHPQASFNLASPEKVSNTTVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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