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Report for CCDS2533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2533.1 Public Homo sapiens 2 OTOS 24 110 108 CCDS HistoryNCBI Gene:150677Re-query CCDS DB by CCDS ID:2533.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 2533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319460.2 ENSP00000322486.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319460.2Link to Ensembl Protein Viewer:ENSP00000322486.1Re-query CCDS DB by Nucleotide ID:ENST00000319460Re-query CCDS DB by Protein ID:ENSP00000322486
Original member Current member EBI ENST00000391989.6 ENSP00000375849.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000391989.6Link to Ensembl Protein Viewer:ENSP00000375849.2Re-query CCDS DB by Nucleotide ID:ENST00000391989Re-query CCDS DB by Protein ID:ENSP00000375849
Original member Current member NCBI NM_148961.4 NP_683764.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_148961.4Link to Protein Sequence:NP_683764.1Re-query CCDS DB by Nucleotide ID:NM_148961Re-query CCDS DB by Protein ID:NP_683764Link to BLAST:NP_683764.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683764.1 89 Q8NHW6 89 100% 0 0

Chromosomal Locations for CCDS 2533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 240139170 240139354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 240140062 240140088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 240140269 240140326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGCAGGCCTGCATGGTGCCGGGGCTGGCCCTCTGCCTCCTACTGGGGCCTCTTGCAGGGGCCAAGCCTG
TGCAGGAGGAAGGAGACCCTTACGCGGAGCTGCCGGCCATGCCCTACTGGCCTTTCTCCACCTCTGACTT
CTGGAACTATGTGCAGCACTTCCAGGCCCTGGGGGCCTACCCCCAGATCGAGGACATGGCCCGAACCTTC
TTTGCCCACTTCCCCCTGGGGAGCACGCTGGGCTTCCACGTTCCCTATCAGGAGGACTGA

Translation (89 aa):
MQACMVPGLALCLLLGPLAGAKPVQEEGDPYAELPAMPYWPFSTSDFWNYVQHFQALGAYPQIEDMARTF
FAHFPLGSTLGFHVPYQED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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