NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1865.1 Public Homo sapiens 2 PUS10 24 110 108 CCDS HistoryNCBI Gene:150962Re-query CCDS DB by CCDS ID:1865.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1865.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316752.11 ENSP00000326003.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316752.11Link to Ensembl Protein Viewer:ENSP00000326003.6Re-query CCDS DB by Nucleotide ID:ENST00000316752Re-query CCDS DB by Protein ID:ENSP00000326003
Original member Current member EBI ENST00000407787.5 ENSP00000386074.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407787.5Link to Ensembl Protein Viewer:ENSP00000386074.1Re-query CCDS DB by Nucleotide ID:ENST00000407787Re-query CCDS DB by Protein ID:ENSP00000386074
Original member Current member NCBI NM_001322123.1 NP_001309052.1 Accepted alive Link to Nucleotide Sequence:NM_001322123.1Link to Protein Sequence:NP_001309052.1Re-query CCDS DB by Nucleotide ID:NM_001322123Re-query CCDS DB by Protein ID:NP_001309052Link to BLAST:NP_001309052.1
Original member Current member NCBI NM_001322124.1 NP_001309053.1 Accepted alive Link to Nucleotide Sequence:NM_001322124.1Link to Protein Sequence:NP_001309053.1Re-query CCDS DB by Nucleotide ID:NM_001322124Re-query CCDS DB by Protein ID:NP_001309053Link to BLAST:NP_001309053.1
Original member Current member NCBI NM_144709.4 NP_653310.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144709.4Link to Protein Sequence:NP_653310.2Re-query CCDS DB by Nucleotide ID:NM_144709Re-query CCDS DB by Protein ID:NP_653310Link to BLAST:NP_653310.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309052.1 529 Q3MIT2 529 100% 0 0
NP_001309053.1 529 Q3MIT2 529 100% 0 0
NP_653310.2 529 Q3MIT2 529 100% 0 0

Chromosomal Locations for CCDS 1865.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 60942395 60942433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60945009 60945108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60948043 60948185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60952997 60953114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60953933 60953988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60954082 60954158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60955018 60955074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60960392 60960517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60961463 60961548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60962826 60962890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60965058 60965103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60965423 60965484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60967502 60967613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 60971523 60971557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61006557 61006643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61008761 61009015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 61011765 61011890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGTTCCCACTGACTGAGGAAAACAAGCATGTGGCCCAGTTGTTGCTCAATACTGGTACTTGTCCAAGAT
GTATCTTCAGATTCTGTGGTGTGGATTTTCATGCACCTTACAAACTTCCATACAAGGAGTTGCTCAATGA
ACTACAGAAATTTCTGGAAACTGAAAAAGATGAATTAATTTTGGAAGTTATGAACCCACCTCCCAAGAAA
ATTCGACTGCAAGAACTGGAAGATAGTATTGATAATCTAAGTCAAAATGGAGAGGGAAGGATCTCTGTTA
GTCATGTTGGAAGCACTGCTTCCAAGAACTCAAATTTAAATGTATGTAATGTATGCCTAGGAATTCTTCA
AGAATTCTGTGAGAAAGATTTCATTAAAAAGGTGTGCCAAAAGGTTGAGGCCTCTGGGTTTGAATTCACC
AGCTTGGTATTTTCAGTCTCCTTCCCACCACAACTATCTGTAAGAGAGCATGCTGCATGGTTGCTGGTAA
AACAGGAAATGGGAAAGCAGAGTCTGTCGCTGGGAAGAGATGATATAGTTCAGCTAAAAGAAGCCTACAA
ATGGATAACTCACCCCCTGTTTTCAGAGGAACTGGGTGTTCCCATTGATGGAAAGAGCTTGTTTGAAGTG
AGTGTGGTCTTTGCTCACCCAGAAACAGTTGAGGATTGCCACTTCCTAGCTGCGATATGCCCAGATTGTT
TTAAGCCAGCCAAAAACAAACAGTCTGTATTCACTAGAATGGCAGTTATGAAAGCCTTGAATAAGATAAA
GGAAGAGGATTTCCTTAAGCAGTTTCCTTGTCCTCCAAACTCACCAAAGGCTGTATGCGCTGTTCTTGAA
ATTGAATGTGCTCATGGTGCTGTTTTTGTGGCTGGGAGATATAATAAATACTCCAGGAATCTACCACAAA
CTCCTTGGATAATTGATGGAGAAAGGAAGCTGGAATCTTCAGTGGAAGAATTAATTTCAGATCATCTGTT
GGCAGTATTTAAAGCAGAGAGTTTTAATTTTTCATCCTCTGGAAGAGAAGATGTAGATGTGAGAACATTA
GGAAATGGAAGGCCCTTTGCAATTGAGCTGGTGAATCCTCATAGAGTACATTTCACTTCACAAGAAATTA
AGGAACTTCAGCAGAAAATTAATAACTCATCTAACAAAATCCAAGTACGTGACTTGCAGCTTGTCACAAG
AGAGGCAATAGGACATATGAAAGAAGGTGAAGAAGAAAAGACAAAGACCTACAGTGCCTTAATTTGGACA
AATAAAGCGATACAGAAGAAAGACATTGAATTCCTAAATGACATAAAGGACTTAAAAATCGACCAGAAAA
CACCTTTGCGCGTCCTTCACCGAAGGCCCCTGGCTGTGCGAGCTCGCGTCATTCACTTCATGGAGACACA
GTACGTGGATGAGCACCACTTCCGCCTCCACTTGAAAACTCAGGCTGGCACCTACATTAAAGAGTTTGTA
CATGGAGACTTCGGGAGAACCAAGCCAAACATTGGGTCCCTGATGAATGTGACTGCAGACATTCTGGAGC
TGGATGTTGAGTCTGTAGATGTTGACTGGCCACCTGCTCTGGATGACTAG

Translation (529 aa):
MFPLTEENKHVAQLLLNTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETEKDELILEVMNPPPKK
IRLQELEDSIDNLSQNGEGRISVSHVGSTASKNSNLNVCNVCLGILQEFCEKDFIKKVCQKVEASGFEFT
SLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGRDDIVQLKEAYKWITHPLFSEELGVPIDGKSLFEV
SVVFAHPETVEDCHFLAAICPDCFKPAKNKQSVFTRMAVMKALNKIKEEDFLKQFPCPPNSPKAVCAVLE
IECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTL
GNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWT
NKAIQKKDIEFLNDIKDLKIDQKTPLRVLHRRPLAVRARVIHFMETQYVDEHHFRLHLKTQAGTYIKEFV
HGDFGRTKPNIGSLMNVTADILELDVESVDVDWPPALDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH