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Report for CCDS31489.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31489.2 Public Homo sapiens 11 OR4C3 24 110 108 CCDS HistoryNCBI Gene:256144Re-query CCDS DB by CCDS ID:31489.2Re-query CCDS DB by GeneID:256144See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31489.1
The coding region has been updated to start at an alternate in-frame start codon that is supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31489.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319856.5 ENSP00000321419.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319856.5Link to Ensembl Protein Viewer:ENSP00000321419.5Re-query CCDS DB by Nucleotide ID:ENST00000319856Re-query CCDS DB by Protein ID:ENSP00000321419
Original member Current member NCBI NM_001004702.2 NP_001004702.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004702.2Link to Protein Sequence:NP_001004702.2Re-query CCDS DB by Nucleotide ID:NM_001004702Re-query CCDS DB by Protein ID:NP_001004702Link to BLAST:NP_001004702.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004702.2 302 Q8NH37 302 100% 0 0

Chromosomal Locations for CCDS 31489.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 48325022 48325930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGACATACCACAAAATATCACAGAATTTTTCATGCTGGGGCTCTCACAGAACTCAGAGGTACAGAGAG
TTCTCTTTGTGGTCTTTTTGCTGATCTATGTGGTCACGGTTTGTGGCAACATGCTCATTGTGGTCACTAT
CACCTCCAGCCCCACGCTGGCTTCCCCTGTGTATTTTTTCCTGGCCAACCTATCCTTTATTGACACCTTT
TATTCTTCTTCTATGGCTCCTAAACTCATTGCTGACTCATTGTATGAGGGGAGAACCATCTCTTATGAGT
GCTGCATGGCTCAGCTCTTTGGAGCTCATTTTTTGGGAGGTGTTGAGATCATTCTGCTCACAGTGATGGC
TTATGACCGCTATGTGGCCATCTGTAAGCCCCTGCACAATACTACCATCATGACCAGGCATCTCTGTGCC
ATGCTTGTAGGGGTGGCTTGGCTTGGGGGCTTCCTGCATTCATTGGTTCAGCTCCTCCTGGTCCTTTGGT
TGCCCTTCTGTGGGCCCAATGTGATCAATCACTTTGCCTGTGACTTGTACCCTTTGCTGGAAGTTGCCTG
CACCAATACGTATGTCATTGGTCTGCTGGTGGTTGCCAACAGTGGTTTAATCTGCCTGTTGAACTTCCTC
ATGCTGGCTGCCTCCTACATTGTCATCCTGTACTCCTTGAGGTCCCACAGTGCAGATGGGAGATGCAAAG
CCCTCTCCACCTGTGGAGCCCACTTCATTGTTGTTGCCTTGTTCTTTGTGCCCTGTATATTTACTTATGT
GCATCCATTTTCTACTTTACCTATAGACAAAAATATGGCATTATTTTATGGTATTCTGACACCTATGTTG
AATCCACTCATTTATACCCTGAGAAATGAAGAGGTAAAAAATGCCATGAGAAAGCTCTTTACATGGTAA

Translation (302 aa):
MDIPQNITEFFMLGLSQNSEVQRVLFVVFLLIYVVTVCGNMLIVVTITSSPTLASPVYFFLANLSFIDTF
YSSSMAPKLIADSLYEGRTISYECCMAQLFGAHFLGGVEIILLTVMAYDRYVAICKPLHNTTIMTRHLCA
MLVGVAWLGGFLHSLVQLLLVLWLPFCGPNVINHFACDLYPLLEVACTNTYVIGLLVVANSGLICLLNFL
MLAASYIVILYSLRSHSADGRCKALSTCGAHFIVVALFFVPCIFTYVHPFSTLPIDKNMALFYGILTPML
NPLIYTLRNEEVKNAMRKLFTW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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