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Report for CCDS22640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22640.1 Public Mus musculus 8 Has3 23 108 98 CCDS HistoryNCBI Gene:15118Re-query CCDS DB by CCDS ID:22640.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034385.11 ENSMUSP00000034385.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034385.11Link to Ensembl Protein Viewer:ENSMUSP00000034385.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034385Re-query CCDS DB by Protein ID:ENSMUSP00000034385
Original member Current member EBI ENSMUST00000176144.7 ENSMUSP00000135303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176144.7Link to Ensembl Protein Viewer:ENSMUSP00000135303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176144Re-query CCDS DB by Protein ID:ENSMUSP00000135303
Original member Current member NCBI NM_001331048.1 NP_001317977.1 Accepted alive Link to Nucleotide Sequence:NM_001331048.1Link to Protein Sequence:NP_001317977.1Re-query CCDS DB by Nucleotide ID:NM_001331048Re-query CCDS DB by Protein ID:NP_001317977Link to BLAST:NP_001317977.1
Original member Current member NCBI NM_008217.4 NP_032243.2 Accepted alive Link to Nucleotide Sequence:NM_008217.4Link to Protein Sequence:NP_032243.2Re-query CCDS DB by Nucleotide ID:NM_008217Re-query CCDS DB by Protein ID:NP_032243Link to BLAST:NP_032243.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317977.1 554 O08650 554 100% 0 0
NP_032243.2 554 O08650 554 100% 0 0

Chromosomal Locations for CCDS 22640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106873908 106874546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106876892 106876993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106877905 106878828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGCCGGTGCAGCTGACTACAGCCCTGCGTGTGGTGGGCACCAGTCTGTTTGCCCTGGTAGTGCTGGGAG
GCATCCTGGCGGCCTATGTGACAGGCTACCAGTTTATCCACACAGAAAAGCACTACCTGTCCTTTGGCCT
CTACGGTGCCATCCTGGGTCTACATCTGCTCATCCAGAGCCTGTTTGCCTTCCTGGAGCACCGTCGAATG
CGCAGGGCAGGGCGCCCCCTCAAGCTGCACTGCTCCCAGAGGCCGCGTTCAGTGGCACTCTGCATTGCTG
CCTACCAAGAGGACCCCGAATACCTGCGCAAGTGCCTTCGCTCAGCTCAGCGCATTGCCTTTCCAAACCT
CAAGGTGGTCATGGTAGTGGATGGCAATCGCCAGGAAGATACCTACATGTTGGACATCTTCCATGAGGTG
CTGGGTGGCACTGAGCAAGCTGGCTTCTTTGTGTGGCGTAGCAATTTCCATGAGGCGGGTGAAGGAGAGA
CAGAGGCCAGCCTGCAGGAAGGCATGGAGCGTGTGCGAGCTGTGGTGTGGGCCAGCACCTTCTCATGCAT
CATGCAGAAGTGGGGGGGCAAGCGTGAGGTCATGTACACTGCCTTCAAGGCCCTTGGCAACTCAGTGGAC
TACATCCAGGTGTGTGACTCTGACACTGTGCTGGACCCAGCCTGCACCATTGAGATGCTTCGAGTCTTGG
AAGAAGATCCCCAAGTAGGAGGTGTTGGAGGAGATGTCCAAATCCTCAACAAGTATGATTCATGGATCTC
CTTCCTGAGCAGTGTGAGGTACTGGATGGCTTTCAACGTGGAGCGGGCCTGCCAGTCCTACTTTGGCTGT
GTGCAATGTATTAGTGGGCCTTTGGGCATGTACCGCAACAGCCTCCTTCAGCAGTTCCTGGAGGATTGGT
ACCATCAGAAGTTCCTAGGCAGCAAGTGCAGCTTTGGGGATGATCGGCACCTTACCAACCGAGTCCTGAG
TCTTGGCTACCGGACTAAGTATACAGCACGCTCTAAGTGCCTCACAGAGACCCCCACTAGGTACCTTCGA
TGGCTCAATCAGCAAACCCGCTGGAGCAAGTCTTACTTTCGGGAATGGCTCTACAATTCTCTGTGGTTCC
ATAAGCACCACCTCTGGATGACCTATGAATCAGTGGTCACAGGTTTCTTCCCATTCTTCCTCATTGCTAC
AGTCATACAACTTTTCTACCGTGGCCGCATCTGGAACATTCTCCTCTTCCTGCTAACAGTGCAGCTGGTG
GGCATTATCAAGGCTACCTATGCCTGCTTCCTTCGAGGCAATGCAGAGATGATCTTCATGTCCCTCTACT
CCCTTCTCTATATGTCCAGCCTCTTGCCAGCCAAGATCTTTGCTATTGCTACCATCAACAAGTCTGGCTG
GGGCACTTCTGGCAGGAAAACCATTGTCGTGAACTTCATTGGCCTAATCCCCGTGTCCATCTGGGTGGCA
GTTCTTCTAGGGGGGTTAGCCTACACAGCTTATTGCCAGGACCTGTTCAGTGAGACCGAGCTAGCCTTCC
TAGTCTCTGGGGCCATCCTGTATGGCTGCTACTGGGTGGCCCTCCTCATGCTGTATCTGGCCATTATTGC
CCGGAGGTGTGGGAAGAAGCCAGAACAGTATAGCCTGGCTTTTGCGGAGGTGTGA

Translation (554 aa):
MPVQLTTALRVVGTSLFALVVLGGILAAYVTGYQFIHTEKHYLSFGLYGAILGLHLLIQSLFAFLEHRRM
RRAGRPLKLHCSQRPRSVALCIAAYQEDPEYLRKCLRSAQRIAFPNLKVVMVVDGNRQEDTYMLDIFHEV
LGGTEQAGFFVWRSNFHEAGEGETEASLQEGMERVRAVVWASTFSCIMQKWGGKREVMYTAFKALGNSVD
YIQVCDSDTVLDPACTIEMLRVLEEDPQVGGVGGDVQILNKYDSWISFLSSVRYWMAFNVERACQSYFGC
VQCISGPLGMYRNSLLQQFLEDWYHQKFLGSKCSFGDDRHLTNRVLSLGYRTKYTARSKCLTETPTRYLR
WLNQQTRWSKSYFREWLYNSLWFHKHHLWMTYESVVTGFFPFFLIATVIQLFYRGRIWNILLFLLTVQLV
GIIKATYACFLRGNAEMIFMSLYSLLYMSSLLPAKIFAIATINKSGWGTSGRKTIVVNFIGLIPVSIWVA
VLLGGLAYTAYCQDLFSETELAFLVSGAILYGCYWVALLMLYLAIIARRCGKKPEQYSLAFAEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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