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Report for CCDS42796.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42796.1 Public Homo sapiens 2 SGO2 24 110 108 CCDS HistoryNCBI Gene:151246Re-query CCDS DB by CCDS ID:42796.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42796.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357799.9 ENSP00000350447.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357799.9Link to Ensembl Protein Viewer:ENSP00000350447.4Re-query CCDS DB by Nucleotide ID:ENST00000357799Re-query CCDS DB by Protein ID:ENSP00000350447
Original member Current member NCBI NM_152524.6 NP_689737.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152524.6Link to Protein Sequence:NP_689737.4Re-query CCDS DB by Nucleotide ID:NM_152524Re-query CCDS DB by Protein ID:NP_689737Link to BLAST:NP_689737.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689737.4 1265 Q562F6-1 1265 100% 0 0

Chromosomal Locations for CCDS 42796.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 200532976 200533108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200534996 200535171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200536065 200536142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200542579 200542664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200569663 200569892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200571050 200573977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200575311 200575461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200583449 200583464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3798 nt):
ATGGAGTGCCCAGTGATGGAAACTGGCTCACTTTTTACCTCAGGAATTAAGAGACATTTGAAAGACAAAA
GAATTTCAAAGACTACTAAGTTGAATGTTTCTCTTGCTTCAAAAATAAAAACAAAAATACTAAATAATTC
TTCTATTTTCAAAATATCTTTAAAGCACAACAACAGGGCATTAGCTCAGGCTCTTAGTAGAGAAAAAGAG
AATTCTCGAAGAATTACAACTGAAAAGATGCTATTGCAAAAAGAAGTAGAGAAACTGAATTTTGAGAACA
CATTTCTTCGCCTAAAGCTAAATAACTTGAATAAGAAGCTTATAGACATAGAAGCTCTCATGAACAATAA
CTTGATAACTGCAATTGAAATGAGCAGTCTTTCTGAGTTCCATCAGAGTTCCTTTCTACTGTCAGCTAGC
AAGAAGAAACGAATTAGTAAACAGTGCAAGTTGATGCGTCTTCCATTTGCAAGGGTTCCATTAACTTCAA
ATGATGATGAAGATGAAGATAAAGAGAAAATGCAGTGTGACAACAATATTAAATCAAAGACATTACCTGA
TATTCCCTCTTCAGGATCAACAACACAACCTTTATCAACTCAGGATAATTCGGAAGTGTTATTTCTTAAA
GAAAATAATCAAAATGTATATGGTTTAGATGATTCAGAACATATTTCTTCTATAGTTGATGTACCTCCCA
GAGAAAGCCATTCCCACTCAGACCAAAGTTCTAAGACTTCTCTAATGAGTGAGATGAGAAACGCCCAGTC
TATTGGCCGCAGATGGGAGAAACCATCTCCTAGTAATGTGACTGAAAGGAAGAAGCGTGGGTCATCTTGG
GAATCAAATAATCTTTCTGCAGACACTCCCTGTGCAACAGTTTTAGATAAACAACACATTTCAAGTCCAG
AATTAAATTGCAATAATGAGATAAATGGTCATACTAATGAAACAAATACTGAAATGCAAAGAAATAAACA
GGATCTTCCTGGCTTATCTTCTGAGTCTGCCAGAGAACCTAATGCAGAGTGCATGAATCAAATTGAGGAT
AATGATGACTTTCAATTGCAGAAAACTGTGTATGATGCTGACATGGATTTAACTGCTAGTGAAGTCAGCA
AAATTGTCACAGTCTCAACAGGCATTAAAAAGAAAAGTAATAAAAAAACAAATGAACATGGAATGAAAAC
TTTCAGAAAAGTGAAAGATTCCAGCTCTGAAAAAAAGAGAGAAAGATCAAAGAGACAGTTTAAAAATAGT
TCAGATGTCGATATTGGGGAAAAGATTGAAAACAGGACAGAAAGATCTGATGTCCTGGATGGCAAAAGGG
GTGCAGAAGATCCCGGTTTTATTTTCAATAATGAACAGCTGGCTCAGATGAATGAACAGCTGGCTCAGGT
GAATGAACTAAAGAAAATGACCCTTCAAACTGGCTTTGAACAAGGTGACAGAGAAAATGTACTGTGTAAT
AAAAAGGAGAAAAGAATAACAAATGAGCAAGAGGAAACATACTCTTTATCCCAAAGTTCAGGTAAATTTC
ACCAGGAGAGTAAATTTGATAAGGGTCAGAATTCCCTAACTTGTAATAAAAGTAAAGCTTCTAGACAGAC
ATTTGTGATTCACAAATTAGAAAAAGATAACTTACTCCCAAACCAAAAGGATAAAGTAACCATTTATGAA
AACCTAGACGTCACAAATGAATTTCACACAGCCAATCTTTCCACCAAAGATAATGGAAATTTATGTGATT
ATGGGACCCACAATATATTGGATTTGAAAAAGTATGTCACTGATATTCAACCCTCAGAGCAAAATGAATC
AAACATTAATAAGCTTAGAAAGAAAGTAAACCGGAAGACAGAAATAATTTCTGGAATGAACCACATGTAT
GAGGATAATGATAAAGATGTGGTGCATGGCCTAAAAAAAGGTAATTTTTTTTTCAAAACCCAAGAGGATA
AAGAACCTATCTCTGAAAACATAGAAGTTTCCAAAGAGCTTCAAATCCCAGCTCTTTCTACTAGAGATAA
TGAAAATCAATGTGACTATAGGACCCAGAATGTGTTGGGTTTGCAAAAGCAGATCACCAATATGTACCCC
GTTCAGCAAAATGAATCAAAAGTTAATAAGAAGCTTAGGCAGAAAGTAAATCGGAAGACAGAAATAATTT
CTGAAGTGAATCATTTAGATAATGACAAAAGTATAGAATACACAGTTAAAAGTCACTCACTCTTTTTAAC
GCAAAAAGATAAGGAAATCATCCCTGGAAACCTAGAAGACCCAAGTGAGTTTGAAACACCTGCTCTTTCT
ACCAAAGATAGTGGAAACCTGTATGATTCTGAGATTCAAAATGTTTTGGGGGTGAAACATGGCCATGATA
TGCAACCTGCTTGTCAAAATGATTCAAAAATAGGTAAGAAGCCTAGACTAAATGTATGTCAAAAGTCAGA
AATAATTCCTGAAACCAACCAAATATATGAGAATGATAACAAAGGTGTACATGACCTAGAAAAAGATAAC
TTCTTCTCTCTAACCCCAAAGGATAAAGAAACAATTTCTGAAAATCTACAAGTCACAAATGAATTTCAAA
CAGTTGATCTTCTCATCAAAGATAATGGAAATTTATGTGATTATGACACCCAGAATATATTGGAGTTGAA
AAAGTATGTTACTGATAGGAAATCTGCTGAGCAAAATGAATCAAAAATAAATAAGCTCAGGAATAAAGTG
AATTGGAAGACAGAAATAATTTCTGAAATGAACCAGATATATGAGGATAATGATAAAGATGCACATGTCC
AAGAAAGCTATACAAAAGATCTTGATTTTAAAGTAAATAAATCTAAACAAAAACTTGAATGCCAAGACAT
TATCAATAAACACTATATGGAAGTCAACAGTAATGAAAAGGAAAGTTGTGATCAAATTTTAGATTCCTAC
AAAGTAGTTAAAAAACGTAAGAAAGAATCATCATGCAAGGCAAAGAACATTTTGACAAAAGCTAAGAACA
AACTTGCTTCACAGTTAACAGAATCTTCACAGACATCTATCTCCTTAGAATCTGATTTAAAACATATTAC
TAGTGAAGCAGATTCTGATCCAGGAAACCCAGTTGAACTATGTAAGACTCAGAAGCAAAGCACTACCACT
TTGAATAAAAAAGATCTCCCTTTTGTGGAAGAAATAAAAGAAGGAGAGTGTCAGGTTAAAAAGGTAAATA
AAATGACATCTAAGTCAAAGAAAAGGAAGACCTCCATAGATCCTTCTCCAGAGAGCCATGAAGTAATGGA
AAGAATACTTGACAGCGTTCAGGGAAAGTCTACTGTATCTGAACAAGCTGATAAGGAAAACAATTTGGAG
AATGAGAAAATGGTCAAAAATAAGCCAGACTTTTACACAAAGGCATTTAGATCTTTGTCTGAGATACATT
CACCTAACATACAAGATTCTTCCTTTGACAGTGTTCGTGAAGGTTTAGTACCTTTGAGCGTTTCTTCTGG
TAAAAATGTGATAATAAAAGAAAATTTTGCCTTGGAGTGCTCCCCAGCCTTTCAAGTAAGTGATGATGAG
CATGAGAAGATGAACAAGATGAAATTTAAAGTCAACCGGAGAACCCAAAAATCAGGAATAGGTGATAGAC
CATTACAGGACTTGTCAAATACCAGTTTTGTTTCAAATAACACTGCTGAATCTGAAAATAAGTCAGAAGA
TCTATCTTCAGAACGGACAAGCAGAAGAAGAAGGTGTACTCCTTTCTATTTTAAAGAGCCAAGCCTCAGA
GACAAGATGAGAAGATGA

Translation (1265 aa):
MECPVMETGSLFTSGIKRHLKDKRISKTTKLNVSLASKIKTKILNNSSIFKISLKHNNRALAQALSREKE
NSRRITTEKMLLQKEVEKLNFENTFLRLKLNNLNKKLIDIEALMNNNLITAIEMSSLSEFHQSSFLLSAS
KKKRISKQCKLMRLPFARVPLTSNDDEDEDKEKMQCDNNIKSKTLPDIPSSGSTTQPLSTQDNSEVLFLK
ENNQNVYGLDDSEHISSIVDVPPRESHSHSDQSSKTSLMSEMRNAQSIGRRWEKPSPSNVTERKKRGSSW
ESNNLSADTPCATVLDKQHISSPELNCNNEINGHTNETNTEMQRNKQDLPGLSSESAREPNAECMNQIED
NDDFQLQKTVYDADMDLTASEVSKIVTVSTGIKKKSNKKTNEHGMKTFRKVKDSSSEKKRERSKRQFKNS
SDVDIGEKIENRTERSDVLDGKRGAEDPGFIFNNEQLAQMNEQLAQVNELKKMTLQTGFEQGDRENVLCN
KKEKRITNEQEETYSLSQSSGKFHQESKFDKGQNSLTCNKSKASRQTFVIHKLEKDNLLPNQKDKVTIYE
NLDVTNEFHTANLSTKDNGNLCDYGTHNILDLKKYVTDIQPSEQNESNINKLRKKVNRKTEIISGMNHMY
EDNDKDVVHGLKKGNFFFKTQEDKEPISENIEVSKELQIPALSTRDNENQCDYRTQNVLGLQKQITNMYP
VQQNESKVNKKLRQKVNRKTEIISEVNHLDNDKSIEYTVKSHSLFLTQKDKEIIPGNLEDPSEFETPALS
TKDSGNLYDSEIQNVLGVKHGHDMQPACQNDSKIGKKPRLNVCQKSEIIPETNQIYENDNKGVHDLEKDN
FFSLTPKDKETISENLQVTNEFQTVDLLIKDNGNLCDYDTQNILELKKYVTDRKSAEQNESKINKLRNKV
NWKTEIISEMNQIYEDNDKDAHVQESYTKDLDFKVNKSKQKLECQDIINKHYMEVNSNEKESCDQILDSY
KVVKKRKKESSCKAKNILTKAKNKLASQLTESSQTSISLESDLKHITSEADSDPGNPVELCKTQKQSTTT
LNKKDLPFVEEIKEGECQVKKVNKMTSKSKKRKTSIDPSPESHEVMERILDSVQGKSTVSEQADKENNLE
NEKMVKNKPDFYTKAFRSLSEIHSPNIQDSSFDSVREGLVPLSVSSGKNVIIKENFALECSPAFQVSDDE
HEKMNKMKFKVNRRTQKSGIGDRPLQDLSNTSFVSNNTAESENKSEDLSSERTSRRRRCTPFYFKEPSLR
DKMRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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