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Report for CCDS43131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43131.1 Public Homo sapiens 3 CD200R1L 24 110 108 CCDS HistoryNCBI Gene:344807Re-query CCDS DB by CCDS ID:43131.1Re-query CCDS DB by GeneID:344807See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 43131.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398214.5 ENSP00000381272.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398214.5Link to Ensembl Protein Viewer:ENSP00000381272.1Re-query CCDS DB by Nucleotide ID:ENST00000398214Re-query CCDS DB by Protein ID:ENSP00000381272
Original member Current member NCBI NM_001008784.4 NP_001008784.2 Accepted alive Link to Nucleotide Sequence:NM_001008784.4Link to Protein Sequence:NP_001008784.2Re-query CCDS DB by Nucleotide ID:NM_001008784Re-query CCDS DB by Protein ID:NP_001008784Link to BLAST:NP_001008784.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008784.2 271 Q6Q8B3-1 271 100% 0 0

Chromosomal Locations for CCDS 43131.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112815963 112815975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112819772 112819895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112826993 112827241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112827367 112827684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112829319 112829384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112845679 112845724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGTCAGCTCCAAGATTACTGATTTCCATCATTATCATGGTGTCTGCTTCAAGTAGTTCATGCATGGGTG
GAAAGCAGATGACACAGAACTATTCAACAATTTTTGCAGAAGGTAACATTTCACAGCCTGTACTGATGGA
TATAAATGCTGTGCTTTGTTGCCCTCCTATCGCATTAAGAAATTTGATCATAATAACATGGGAAATAATC
CTGAGAGGCCAGCCTTCCTGCACAAAAGCCTACAAGAAAGAAACAAATGAGACCAAGGAAACCAACTGTA
CTGTTGAGAGAATAACCTGGGTCTCTAGACCTGATCAGAATTCGGACCTTCAGATTCGTCCGGTGGACAC
CACTCATGACGGGTATTACAGAGGCATAGTGGTAACACCTGATGGGAATTTCCATCGTGGATATCACCTC
CAAGTGTTAGTTACACCCGAAGTGAACCTATTTCAAAGCAGGAATATAACTGCAGTATGCAAGGCAGTTA
CAGGGAAGCCAGCTGCCCAGATCTCCTGGATCCCAGAGGGATCTATTCTTGCCACTAAGCAAGAATACTG
GGGCAATGGCACAGTGACGGTTAAGAGTACATGCCCCTGGGAGGGCCACAAGTCTACTGTGACCTGCCAT
GTCTCCCATTTGACTGGCAACAAGAGTCTGTCCGTAAAGTTGAATTCAGGTCTCAGAACCTCAGGATCTC
CAGCGTTGTCCTTACTGATCATTCTTTATGTGAAACTCTCTCTTTTTGTGGTCATTCTGGTCACCACAGG
ATTTGTTTTCTTCCAGAGGATAAATCATGTCAGAAAAGTTCTTTAA

Translation (271 aa):
MSAPRLLISIIIMVSASSSSCMGGKQMTQNYSTIFAEGNISQPVLMDINAVLCCPPIALRNLIIITWEII
LRGQPSCTKAYKKETNETKETNCTVERITWVSRPDQNSDLQIRPVDTTHDGYYRGIVVTPDGNFHRGYHL
QVLVTPEVNLFQSRNITAVCKAVTGKPAAQISWIPEGSILATKQEYWGNGTVTVKSTCPWEGHKSTVTCH
VSHLTGNKSLSVKLNSGLRTSGSPALSLLIILYVKLSLFVVILVTTGFVFFQRINHVRKVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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