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Report for CCDS92540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92540.1 Public Homo sapiens 19 PALM3 24 110 108 CCDS HistoryNCBI Gene:342979Re-query CCDS DB by CCDS ID:92540.1Re-query CCDS DB by GeneID:342979See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92540.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589048.2 ENSP00000465701.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589048.2Link to Ensembl Protein Viewer:ENSP00000465701.2Re-query CCDS DB by Nucleotide ID:ENST00000589048Re-query CCDS DB by Protein ID:ENSP00000465701
Original member Current member NCBI NM_001367327.1 NP_001354256.1 Accepted alive Link to Nucleotide Sequence:NM_001367327.1Link to Protein Sequence:NP_001354256.1Re-query CCDS DB by Nucleotide ID:NM_001367327Re-query CCDS DB by Protein ID:NP_001354256Link to BLAST:NP_001354256.1

Chromosomal Locations for CCDS 92540.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14053605 14055226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14055380 14055425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14056429 14056513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14056662 14056777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGATGGGGCAGCTGCAGTGCCAGAGCCATCCGAAGACCCCACCTCGAAGGACCCCCAGTCACCCGAGG
GCCAGGCTCAGGCCCGAATCCGGAACCTGGAAGACAGTTTGTTCACACTCCAGTCCCAGCTGCAACTGTT
GCAAAGTGCTTCCACAGGTGCCCAGCACAAGCCCTCAGGCAGGCCCAGCTGGCGCAGACAGGGTCACCGT
CCTCTCTCCCAGTCCATTGTCGAGGCAGGTTCTGTAGGCCAGACTGATCTGAACAAGAGAGCCTCCCTGC
CGGCTGGACTAGTGGGCACGCCTCCAGAGTCCCCCTCTGAGCCCAGGGAGGATGTCTTGGGGTTTCTGCC
AGGCCCGAGGCAGGTCCCCGGGGCAGCAGGAGACTCCTCAGAAGCCAATGGCCCATGCCCCAGCCCCATC
CCCACTCCAGAGCAGGGGCTAAGTCAGAGGGCAGTGCCATCCGAAGGGCGGGTGGGTGAGGCCAAAGGAG
GGGGCGTGGTGAGTGTGGTGTGGGAAGGGCTGAGGGCCACAGAGGACTGTGCCACAGGGGCCACGGGCCC
CGAGCTGGAGGCTAAGGTGGAGGAAGTGGTGCTGGAAGCCATCGGAGACAGGAAGGGAGCTGGTAGCCTG
GAGCTCCCGGCCTGGGTGAAGGAGGACAGGGGCATCGTGGAGGTGGTCTGGGAGGGGGTGGGTGGCAGTG
ATGCAGAGGCCATGGGGGAGATAGGCAGGGTCCCTGAGGTCGTGCAGACTAGCTCGCCTAGGCTCCAGGA
GAGATTAGAGGCAGCAGCTTCCATAGAAGGGGAAGATGTGCCCCAGGGCAGCCCTGAGGGTGATGGGCAG
GGAGGCTCTGGAGGAGAGGAGGGATCCTTCATTTGGGTGGAGAGAGTGACCCTCAGTGAAGAGTGGGAGG
AGCTGCTGGTGGAGGGGTTGGAAGGGCCCGAGGTGGCAGGGAGGGAGAGAGGAGATGAAAGCCCGCTGGG
GGCCGAGGGGGCCAAGACGGGAGGAGGCGAGGAGACCTGGGAGGCAGAGAAGAGAAAAGCGGAAGAATCC
ATGGGAATAGGAAGTGAGGAAAAGCCAGGGACAGGGAGGGATGAAGCGGAGATGTCACCAGTGGTAGAGA
GGAAAGGAGGAGAGAAGAAGTTGGAGCTGGAGAGCAGAGGAAGTGCAGAAAAGCTGGGAACAGAGAGGGA
AGGAGGTGAGGAACCACTGGGCATAGAGAGAAAAGTTGAGGGACATTTGAGGGCAGAGAAGGAAGGAGAT
GAGGAAAAGCGAGGGGCAGAGGAGGAGGAGGTAGAAGAACCATTGGGAGTAGAGAAGAAAGGAGGTGAGG
AAGAGCCAGAGGCAACCAAAGAACCACTGGAGGCAGAGAGAAAGGGAGGGGAGGAGACACTGGAGGCAGA
GAAAAGGGGAGGTGAGGAATCATTGGAGACAGAGAAGACCCAAGGGACGGAGGGAGATCTGAATCTAGAA
CAAGGGTCTAGGGAAGGAAGTGAATCCCAGGCAGAGGAGATGAATGAGGCAGGGCCTCCCCTTGAGGCTA
ACACGGAGACAAGGCCAGAGAAGGAAGGACCCCAGCCCCAGGAGAAGCCAGTAGGAGCCCTGGAGGAGGA
AGGAGTGAAGCCCCAAACCGCTGCTGAGGGCCAAGGCCCCTTGGGGGATGCCACACCTCTTCTGGCAGAG
ACCCCAGCCCCAGAGCAGCCCGCCGAATGCCAGCCACTGCTTCAGGGGGAGGGGCCCAGCGCCAACCCCA
GTGCCCACCCTGTGCCCACCTACGCGCCTGCCCGGCAGCCTGAGCCATCTGCCCCCACCGAGGGTGAAGA
GGCAAGTGGCCCTAAGCAAAAGACGTGCCAGTGTTGTGCGGTCATGTGA

Translation (622 aa):
MDGAAAVPEPSEDPTSKDPQSPEGQAQARIRNLEDSLFTLQSQLQLLQSASTGAQHKPSGRPSWRRQGHR
PLSQSIVEAGSVGQTDLNKRASLPAGLVGTPPESPSEPREDVLGFLPGPRQVPGAAGDSSEANGPCPSPI
PTPEQGLSQRAVPSEGRVGEAKGGGVVSVVWEGLRATEDCATGATGPELEAKVEEVVLEAIGDRKGAGSL
ELPAWVKEDRGIVEVVWEGVGGSDAEAMGEIGRVPEVVQTSSPRLQERLEAAASIEGEDVPQGSPEGDGQ
GGSGGEEGSFIWVERVTLSEEWEELLVEGLEGPEVAGRERGDESPLGAEGAKTGGGEETWEAEKRKAEES
MGIGSEEKPGTGRDEAEMSPVVERKGGEKKLELESRGSAEKLGTEREGGEEPLGIERKVEGHLRAEKEGD
EEKRGAEEEEVEEPLGVEKKGGEEEPEATKEPLEAERKGGEETLEAEKRGGEESLETEKTQGTEGDLNLE
QGSREGSESQAEEMNEAGPPLEANTETRPEKEGPQPQEKPVGALEEEGVKPQTAAEGQGPLGDATPLLAE
TPAPEQPAECQPLLQGEGPSANPSAHPVPTYAPARQPEPSAPTEGEEASGPKQKTCQCCAVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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