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Report for CCDS6038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6038.1 Public Homo sapiens 8 TNFRSF10D 24 110 108 CCDS HistoryNCBI Gene:8793Re-query CCDS DB by CCDS ID:6038.1Re-query CCDS DB by GeneID:8793See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312584.4 ENSP00000310263.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312584.4Link to Ensembl Protein Viewer:ENSP00000310263.3Re-query CCDS DB by Nucleotide ID:ENST00000312584Re-query CCDS DB by Protein ID:ENSP00000310263
Original member Current member NCBI NM_003840.5 NP_003831.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003840.5Link to Protein Sequence:NP_003831.2Re-query CCDS DB by Nucleotide ID:NM_003840Re-query CCDS DB by Protein ID:NP_003831Link to BLAST:NP_003831.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003831.2 386 Q9UBN6 386 100% 0 0

Chromosomal Locations for CCDS 6038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 23137870 23138003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23138188 23138260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23144450 23144635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23145058 23145089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23145668 23145921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23146961 23147072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23148438 23148551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23154874 23154979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 23163786 23163935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGGACTTTGGGGACAAAGCGTCCCGACCGCCTCGAGCGCTCGAGCAGGGCGCTATCCAGGAGCCAGGA
CAGCGTCGGGAACCAGACCATGGCTCCTGGACCCCAAGATCCTTAAGTTCGTCGTCTTCATCGTCGCGGT
TCTGCTGCCGGTCCGGGTTGACTCTGCCACCATCCCCCGGCAGGACGAAGTTCCCCAGCAGACAGTGGCC
CCACAGCAACAGAGGCGCAGCCTCAAGGAGGAGGAGTGTCCAGCAGGATCTCATAGATCAGAATATACTG
GAGCCTGTAACCCGTGCACAGAGGGTGTGGATTACACCATTGCTTCCAACAATTTGCCTTCTTGCCTGCT
ATGTACAGTTTGTAAATCAGGTCAAACAAATAAAAGTTCCTGTACCACGACCAGAGACACCGTGTGTCAG
TGTGAAAAAGGAAGCTTCCAGGATAAAAACTCCCCTGAGATGTGCCGGACGTGTAGAACAGGGTGTCCCA
GAGGGATGGTCAAGGTCAGTAATTGTACGCCCCGGAGTGACATCAAGTGCAAAAATGAATCAGCTGCCAG
TTCCACTGGGAAAACCCCAGCAGCGGAGGAGACAGTGACCACCATCCTGGGGATGCTTGCCTCTCCCTAT
CACTACCTTATCATCATAGTGGTTTTAGTCATCATTTTAGCTGTGGTTGTGGTTGGCTTTTCATGTCGGA
AGAAATTCATTTCTTACCTCAAAGGCATCTGCTCAGGTGGTGGAGGAGGTCCCGAACGTGTGCACAGAGT
CCTTTTCCGGCGGCGTTCATGTCCTTCACGAGTTCCTGGGGCGGAGGACAATGCCCGCAACGAGACCCTG
AGTAACAGATACTTGCAGCCCACCCAGGTCTCTGAGCAGGAAATCCAAGGTCAGGAGCTGGCAGAGCTAA
CAGGTGTGACTGTAGAGTTGCCAGAGGAGCCACAGCGTCTGCTGGAACAGGCAGAAGCTGAAGGGTGTCA
GAGGAGGAGGCTGCTGGTTCCAGTGAATGACGCTGACTCCGCTGACATCAGCACCTTGCTGGATGCCTCG
GCAACACTGGAAGAAGGACATGCAAAGGAAACAATTCAGGACCAACTGGTGGGCTCCGAAAAGCTCTTTT
ATGAAGAAGATGAGGCAGGCTCTGCTACGTCCTGCCTGTGA

Translation (386 aa):
MGLWGQSVPTASSARAGRYPGARTASGTRPWLLDPKILKFVVFIVAVLLPVRVDSATIPRQDEVPQQTVA
PQQQRRSLKEEECPAGSHRSEYTGACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQ
CEKGSFQDKNSPEMCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGMLASPY
HYLIIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCPSRVPGAEDNARNETL
SNRYLQPTQVSEQEIQGQELAELTGVTVELPEEPQRLLEQAEAEGCQRRRLLVPVNDADSADISTLLDAS
ATLEEGHAKETIQDQLVGSEKLFYEEDEAGSATSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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