NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53543.1 Public Homo sapiens 10 SAMD8 24 110 108 CCDS HistoryNCBI Gene:142891Re-query CCDS DB by CCDS ID:53543.1Re-query CCDS DB by GeneID:142891See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53543.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542569.6 ENSP00000438042.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542569.6Link to Ensembl Protein Viewer:ENSP00000438042.1Re-query CCDS DB by Nucleotide ID:ENST00000542569Re-query CCDS DB by Protein ID:ENSP00000438042
Original member Current member EBI ENST00000671800.1 ENSP00000500411.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671800.1Link to Ensembl Protein Viewer:ENSP00000500411.1Re-query CCDS DB by Nucleotide ID:ENST00000671800Re-query CCDS DB by Protein ID:ENSP00000500411
Original member Current member NCBI NM_001174156.2 NP_001167627.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001174156.2Link to Protein Sequence:NP_001167627.1Re-query CCDS DB by Nucleotide ID:NM_001174156Re-query CCDS DB by Protein ID:NP_001167627Link to BLAST:NP_001167627.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167627.1 415 Q96LT4-1 415 100% 0 0

Chromosomal Locations for CCDS 53543.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 75150529 75151106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75164645 75164740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75168541 75168658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75176066 75176216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 75176388 75176692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGGCAGGTCCTAATCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTAGCTGTGTGGCTGAAGGATG
AAGGCTTTTTTGAATATGTGGACATTTTATGCAATAAGCACCGACTTGATGGAATCACATTGCTAACATT
GACTGAATATGATCTCCGGTCTCCTCCTCTGGAAATCAAAGTCTTAGGGGACATTAAAAGGTTAATGCTC
TCAGTCCGAAAATTGCAGAAAATACATATTGATGTTTTAGAAGAGATGGGCTACAACAGTGACAGTCCCA
TGGGTTCCATGACCCCTTTCATCAGTGCTCTTCAGAGTACAGACTGGCTCTGTAATGGGGAGCTTTCCCA
TGACTGTGACGGACCCATAACTGACTTGAATTCTGATCAGTACCAGTACATGAATGGTAAAAACAAACAT
TCTGTTCGAAGATTGGACCCAGAATACTGGAAGACTATACTGAGTTGTATATATGTTTTTATAGTATTTG
GATTTACATCTTTCATTATGGTTATAGTCCATGAGCGAGTGCCTGACATGCAGACCTATCCACCACTCCC
AGATATATTCTTAGACAGCGTTCCTAGAATCCCATGGGCCTTTGCCATGACGGAAGTATGTGGCATGATT
CTGTGCTATATTTGGCTCCTGGTTCTTCTTCTTCACAAGCACAGGTCAATACTTCTGCGAAGGCTCTGTA
GTCTGATGGGAACTGTATTCTTGCTTCGCTGCTTTACCATGTTTGTGACCTCCCTCTCCGTGCCAGGACA
ACACCTGCAGTGTACTGGAAAGATATATGGCAGTGTATGGGAGAAATTACATCGAGCCTTTGCCATTTGG
AGTGGCTTTGGTATGACCCTGACTGGCGTTCACACATGTGGAGATTACATGTTTAGTGGCCACACAGTCG
TCCTAACTATGCTGAATTTCTTTGTCACCGAATATACACCAAGAAGCTGGAATTTCTTGCACACTTTATC
CTGGGTTCTCAACCTCTTTGGAATCTTCTTCATCTTGGCTGCCCATGAACATTATTCTATTGATGTGTTT
ATTGCTTTTTATATAACAACAAGACTCTTTTTGTACTACCATACTCTGGCCAATACCAGAGCATATCAGC
AGAGTAGGAGAGCAAGGATTTGGTTTCCCATGTTCTCTTTTTTTGAATGCAATGTTAATGGCACAGTACC
TAATGAATATTGTTGGCCATTTTCAAAACCAGCAATAATGAAAAGACTAATTGGATGA

Translation (415 aa):
MAGPNQLCIRRWTTKHVAVWLKDEGFFEYVDILCNKHRLDGITLLTLTEYDLRSPPLEIKVLGDIKRLML
SVRKLQKIHIDVLEEMGYNSDSPMGSMTPFISALQSTDWLCNGELSHDCDGPITDLNSDQYQYMNGKNKH
SVRRLDPEYWKTILSCIYVFIVFGFTSFIMVIVHERVPDMQTYPPLPDIFLDSVPRIPWAFAMTEVCGMI
LCYIWLLVLLLHKHRSILLRRLCSLMGTVFLLRCFTMFVTSLSVPGQHLQCTGKIYGSVWEKLHRAFAIW
SGFGMTLTGVHTCGDYMFSGHTVVLTMLNFFVTEYTPRSWNFLHTLSWVLNLFGIFFILAAHEHYSIDVF
IAFYITTRLFLYYHTLANTRAYQQSRRARIWFPMFSFFECNVNGTVPNEYCWPFSKPAIMKRLIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH