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Report for CCDS33852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33852.1 Public Homo sapiens 3 HMCES 24 110 108 CCDS HistoryNCBI Gene:56941Re-query CCDS DB by CCDS ID:33852.1Re-query CCDS DB by GeneID:56941See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383463.9 ENSP00000372955.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383463.9Link to Ensembl Protein Viewer:ENSP00000372955.3Re-query CCDS DB by Nucleotide ID:ENST00000383463Re-query CCDS DB by Protein ID:ENSP00000372955
Original member Current member EBI ENST00000389735.7 ENSP00000374385.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389735.7Link to Ensembl Protein Viewer:ENSP00000374385.3Re-query CCDS DB by Nucleotide ID:ENST00000389735Re-query CCDS DB by Protein ID:ENSP00000374385
Original member Current member EBI ENST00000502878.6 ENSP00000426215.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502878.6Link to Ensembl Protein Viewer:ENSP00000426215.1Re-query CCDS DB by Nucleotide ID:ENST00000502878Re-query CCDS DB by Protein ID:ENSP00000426215
Original member Current member NCBI NM_001006109.1 NP_001006109.1 Accepted alive Link to Nucleotide Sequence:NM_001006109.1Link to Protein Sequence:NP_001006109.1Re-query CCDS DB by Nucleotide ID:NM_001006109Re-query CCDS DB by Protein ID:NP_001006109Link to BLAST:NP_001006109.1
Original member Current member NCBI NM_001370343.1 NP_001357272.1 Accepted alive Link to Nucleotide Sequence:NM_001370343.1Link to Protein Sequence:NP_001357272.1Re-query CCDS DB by Nucleotide ID:NM_001370343Re-query CCDS DB by Protein ID:NP_001357272Link to BLAST:NP_001357272.1
Original member Current member NCBI NM_001370344.1 NP_001357273.1 Accepted alive Link to Nucleotide Sequence:NM_001370344.1Link to Protein Sequence:NP_001357273.1Re-query CCDS DB by Nucleotide ID:NM_001370344Re-query CCDS DB by Protein ID:NP_001357273Link to BLAST:NP_001357273.1
Original member Current member NCBI NM_020187.3 NP_064572.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020187.3Link to Protein Sequence:NP_064572.2Re-query CCDS DB by Nucleotide ID:NM_020187Re-query CCDS DB by Protein ID:NP_064572Link to BLAST:NP_064572.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006109.1 354 Q96FZ2 354 100% 0 0
NP_001357272.1 354 Q96FZ2 354 100% 0 0
NP_001357273.1 354 Q96FZ2 354 100% 0 0
NP_064572.2 354 Q96FZ2 354 100% 0 0

Chromosomal Locations for CCDS 33852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129279733 129279915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129288854 129288997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129290679 129290804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129298354 129298535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129301950 129302142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129304589 129304825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGTGTGGGCGAACATCCTGTCACTTACCTAGAGATGTTCTCACGAGAGCTTGCGCCTACCAGGATCGGC
GGGGCCAGCAGCGGCTCCCGGAGTGGAGGGACCCTGATAAGTACTGCCCCTCTTACAACAAGAGTCCTCA
ATCCAACAGCCCAGTGCTTCTGTCTCGACTGCACTTTGAGAAGGATGCAGACTCATCTGAGCGTATCATT
GCTCCCATGCGCTGGGGCTTGGTCCCTTCTTGGTTCAAAGAAAGTGATCCTTCCAAGCTGCAGTTCAATA
CTACCAACTGTCGTAGTGATACCGTAATGGAGAAACGGTCATTTAAGGTGCCTCTGGGAAAGGGAAGACG
CTGTGTCGTTTTAGCAGATGGATTCTATGAGTGGCAGCGATGTCAGGGAACAAACCAGAGGCAGCCATAC
TTCATCTATTTTCCTCAAATCAAGACAGAGAAGTCAGGTAGCATTGGTGCTGCAGATAGTCCTGAGAACT
GGGAGAAAGTCTGGGACAACTGGAGGCTGCTGACAATGGCCGGGATCTTTGACTGCTGGGAGCCCCCAGA
GGGAGGAGATGTCCTGTATTCCTATACCATCATCACAGTGGATTCCTGCAAAGGCTTGAGTGACATCCAC
CACAGGATGCCTGCCATATTAGATGGAGAGGAGGCAGTTTCTAAATGGCTTGACTTTGGTGAAGTCTCAA
CTCAGGAAGCTCTGAAATTAATCCACCCAACAGAGAACATCACCTTCCATGCAGTCTCTTCTGTGGTGAA
CAACTCGCGAAACAACACTCCTGAGTGTCTGGCTCCTGTCGACTTGGTGGTCAAAAAGGAGCTCAGGGCA
AGTGGCAGTAGCCAGAGGATGTTGCAGTGGTTGGCCACAAAGTCACCCAAAAAGGAAGACTCAAAAACAC
CTCAAAAGGAAGAGTCAGATGTTCCCCAGTGGTCCAGTCAGTTCCTGCAGAAGAGTCCACTCCCCACCAA
GAGAGGCACTGCAGGACTCCTAGAGCAATGGCTGAAGCGGGAGAAGGAGGAGGAACCTGTGGCCAAGCGT
CCTTACAGCCAGTGA

Translation (354 aa):
MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFEKDADSSERII
APMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVVLADGFYEWQRCQGTNQRQPY
FIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYTIITVDSCKGLSDIH
HRMPAILDGEEAVSKWLDFGEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKELRA
SGSSQRMLQWLATKSPKKEDSKTPQKEESDVPQWSSQFLQKSPLPTKRGTAGLLEQWLKREKEEEPVAKR
PYSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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