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Report for CCDS42276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42276.1 Public Homo sapiens 17 FAM83G 24 110 108 CCDS HistoryNCBI Gene:644815Re-query CCDS DB by CCDS ID:42276.1Re-query CCDS DB by GeneID:644815See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42276.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345041.4 ENSP00000343279.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345041.4Link to Ensembl Protein Viewer:ENSP00000343279.4Re-query CCDS DB by Nucleotide ID:ENST00000345041Re-query CCDS DB by Protein ID:ENSP00000343279
Original member Current member EBI ENST00000388995.11 ENSP00000373647.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000388995.11Link to Ensembl Protein Viewer:ENSP00000373647.5Re-query CCDS DB by Nucleotide ID:ENST00000388995Re-query CCDS DB by Protein ID:ENSP00000373647
Original member Current member NCBI NM_001039999.3 NP_001035088.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039999.3Link to Protein Sequence:NP_001035088.2Re-query CCDS DB by Nucleotide ID:NM_001039999Re-query CCDS DB by Protein ID:NP_001035088Link to BLAST:NP_001035088.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035088.2 823 A6ND36-1 823 100% 0 0

Chromosomal Locations for CCDS 42276.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 18971359 18971748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18977584 18978850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18979549 18979673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 18988247 18988414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19003520 19004041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGGCCTTCTCTCAGGTGCAGTGTCTGGACGACAACCATGTGAACTGGCGCTCCAGCGAGTCCAAGCCTG
AGTTCTTCTACAGCGAGGAGCAGCGGCTGGCGCTGGAGGCCCTGGTGGCCCGCGGCCGGGACGCCTTCTA
CGAGGTGCTCAAGCGGGAGAACATCCGAGACTTCCTCTCGGAGCTGGAGCTCAAGCGCATCCTGGAGACC
ATCGAGGTGTACGACCCGGGCTCTGAGGACCCTCGGGGCACGGGCCCCTCTCAGGGGCCCGAGGACAATG
GGGTCGGCGACGGCGAGGAAGCCAGCGGGGCGGATGGGGTCCCCATCGAGGCCGAGCCGCTGCCCTCCCT
GGAGTACTGGCCCCAGAAGTCGGACCGCTCCATCCCGCAGCTGGACCTGGGCTGGCCCGACACCATCGCC
TACCGCGGCGTGACCCGGGCTAGCGTCTACATGCAGCCCCCCATAGACGGGCAGGCCCACATCAAAGAGG
TGGTGCGGAAGATGATCAGCCAGGCACAGAAGGTGATAGCTGTGGTCATGGACATGTTCACCGACGTGGA
CATCTTCAAGGACCTGCTGGACGCCGGCTTCAAGAGGAAAGTGGCCGTGTACATCATCGTGGATGAGAGT
AACGTCAAGTACTTCCTGCACATGTGTGAGCGGGCCTGCATGCACCTGGGGCACCTCAAGAATCTCAGAG
TGCGGAGCAGCGGGGGAACTGAGTTCTTCACGCGGTCGGCAACCAAGTTCAAGGGTGCCCTGGCCCAGAA
GTTCATGTTTGTGGATGGAGACCGGGCTGTGTGCGGCTCCTACAGCTTCACGTGGTCGGCCGCGCGGACG
GACCGGAATGTGATCTCTGTGCTGTCTGGCCAGGTGGTGGAGATGTTTGACCGGCAGTTCCAGGAGCTGT
ACCTCATGTCACACAGTGTGAGCCTCAAGGGCATCCCTATGGAGAAGGAACCGGAGCCGGAGCCTATTGT
GCTGCCCTCTGTGGTCCCCCTGGTGCCCGCGGGCACTGTGGCCAAGAAGCTCGTCAACCCCAAGTACGCA
CTTGTCAAGGCCAAGAGCGTCGACGAGATTGCCAAGATCTCCTCTGAGAAGCAGGAGGCCAAGAAGCCCC
TGGGGCTGAAAGGCCCAGCGCTGGCTGAGCATCCAGGGGAACTCCCCGAGCTGCTGCCACCCATCCACCC
AGGACTGCTTCACCTGGAGAGGGCCAACATGTTTGAGTACCTGCCCACGTGGGTGGAGCCAGACCCGGAG
CCTGGCAGCGACATCCTGGGCTACATCAATATCATCGACCCCAACATCTGGAACCCCCAGCCCAGCCAGA
TGAACCGCATCAAGATCCGTGACACCTCCCAGGCCAGCGCCCAGCACCAGCTGTGGAAGCAGAGCCAGGA
CAGCAGGCCCCGTCCAGAGCCTTGCCCTCCCCCAGAGCCCAGTGCCCCCCAGGACGGTGTCCCAGCTGAG
AACGGCCTCCCCCAGGGGGACCCTGAGCCATTGCCCCCCGTGCCCAAGCCCCGGACAGTCCCTGTGGCAG
ATGTACTAGCCCGGGACAGCAGTGATATTGGCTGGGTCCTGGAGCTCCCCAAAGAGGAAGCTCCCCAGAA
TGGGACAGACCATAGGCTACCCAGGATGGCAGGCCCAGGCCACGCCCCACTCCAGCGGCAGCTATCTGTG
ACCCAGGATGACCCCGAGAGCCTCGGGGTGGGGCTCCCCAATGGGCTGGATGGGGTGGAAGAAGAAGATG
ATGACGACTACGTAACCCTCAGTGACCAGGACAGCCACTCAGGCAGCTCCGGCCGTGGCCCTGGCCCCCG
ACGGCCCTCAGTGGCTTCCTCTGTGTCAGAGGAGTACTTCGAGGTGAGAGAGCACTCAGTCCCTCTCCGG
AGGCGCCACTCAGAGCAAGTGGCCAACGGGCCAACCCCACCACCGCGCCGGCAGCTGAGTGCCCCCCATA
TAACCCGAGGGACCTTTGTTGGACCCCAGGGTGGCTCCCCATGGGCCCAGAGTCGGGGAAGAGAAGAAGC
AGATGCGTTGAAGAGGATGCAGGCCCAGCGCTCCACAGACAAGGAGGCACAGGGCCAGCAGTTTCATCAT
CACAGGGTCCCTGCCTCAGGGACTAGGGATAAAGACGGCTTCCCAGGACCCCCTAGGTACCGCTCTGCTG
CTGACAGCGTCCAGAGCTCTACCAGAAACGCTGGCCCAGCCATGGCTGGCCCCCACCACTGGCAGGCCAA
GGGAGGTCAGGTACCCCGCCTGCTTCCGGATCCCGGCAGCCCAAGACTGGCCCAAAATGCCCGCCCCATG
ACCGATGGCAGGGCCACCGAGGAGCATCCGAGTCCCTTCGGAATCCCATACTCCAAACTGTCTCAGTCGA
AGCACCTAAAGGCCAGGACGGGCGGTAGCCAGTGGGCCTCATCGGATTCTAAACGGAGGGCTCAAGCCCC
CCGGGACCGCAAAGACCCCTAG

Translation (823 aa):
MAFSQVQCLDDNHVNWRSSESKPEFFYSEEQRLALEALVARGRDAFYEVLKRENIRDFLSELELKRILET
IEVYDPGSEDPRGTGPSQGPEDNGVGDGEEASGADGVPIEAEPLPSLEYWPQKSDRSIPQLDLGWPDTIA
YRGVTRASVYMQPPIDGQAHIKEVVRKMISQAQKVIAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDES
NVKYFLHMCERACMHLGHLKNLRVRSSGGTEFFTRSATKFKGALAQKFMFVDGDRAVCGSYSFTWSAART
DRNVISVLSGQVVEMFDRQFQELYLMSHSVSLKGIPMEKEPEPEPIVLPSVVPLVPAGTVAKKLVNPKYA
LVKAKSVDEIAKISSEKQEAKKPLGLKGPALAEHPGELPELLPPIHPGLLHLERANMFEYLPTWVEPDPE
PGSDILGYINIIDPNIWNPQPSQMNRIKIRDTSQASAQHQLWKQSQDSRPRPEPCPPPEPSAPQDGVPAE
NGLPQGDPEPLPPVPKPRTVPVADVLARDSSDIGWVLELPKEEAPQNGTDHRLPRMAGPGHAPLQRQLSV
TQDDPESLGVGLPNGLDGVEEEDDDDYVTLSDQDSHSGSSGRGPGPRRPSVASSVSEEYFEVREHSVPLR
RRHSEQVANGPTPPPRRQLSAPHITRGTFVGPQGGSPWAQSRGREEADALKRMQAQRSTDKEAQGQQFHH
HRVPASGTRDKDGFPGPPRYRSAADSVQSSTRNAGPAMAGPHHWQAKGGQVPRLLPDPGSPRLAQNARPM
TDGRATEEHPSPFGIPYSKLSQSKHLKARTGGSQWASSDSKRRAQAPRDRKDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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