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Report for CCDS324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
324.1 Public Homo sapiens 1 TRNAU1AP 24 110 108 CCDS HistoryNCBI Gene:54952Re-query CCDS DB by CCDS ID:324.1Re-query CCDS DB by GeneID:54952See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 324.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373830.4 ENSP00000362936.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373830.4Link to Ensembl Protein Viewer:ENSP00000362936.3Re-query CCDS DB by Nucleotide ID:ENST00000373830Re-query CCDS DB by Protein ID:ENSP00000362936
Original member Current member NCBI NM_017846.5 NP_060316.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017846.5Link to Protein Sequence:NP_060316.1Re-query CCDS DB by Nucleotide ID:NM_017846Re-query CCDS DB by Protein ID:NP_060316Link to BLAST:NP_060316.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060316.1 287 Q9NX07-1 287 100% 0 0

Chromosomal Locations for CCDS 324.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28553111 28553137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28553640 28553737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28560633 28560732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28561346 28561398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28564703 28564834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28567294 28567413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28571176 28571338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28571867 28571900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28577500 28577636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCGGCCAGCCTGTGGATGGGCGACCTGGAACCCTACATGGATGAGAACTTCATCTCCAGAGCCTTTG
CCACCATGGGGGAGACCGTAATGAGCGTCAAAATTATCCGAAACCGCCTCACTGGGATCCCAGCTGGCTA
CTGCTTTGTAGAATTTGCAGATTTGGCCACAGCTGAGAAGTGTTTGCATAAAATTAATGGGAAACCCCTT
CCAGGAGCCACACCTGCGAAACGTTTTAAACTGAACTATGCCACTTACGGGAAACAACCAGATAACAGCC
CTGAGTATTCCCTCTTTGTGGGGGACCTGACCCCGGACGTGGATGATGGCATGCTGTATGAATTCTTCGT
CAAAGTCTACCCCTCCTGTCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGTTATGGT
TTTGTGAAATTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCAGTGGGACTGG
GGTCTAAGCCTGTGCGGCTGAGCGTGGCAATCCCTAAAGCGAGCCGTGTAAAGCCAGTGGAATATAGTCA
GATGTACAGTTATAGCTACAACCAGTATTATCAGCAGTACCAGAACTACTATGCTCAGTGGGGCTATGAC
CAGAACACAGGCAGCTACAGCTACAGTTACCCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATG
AAGAAGTTGGAGATGATGCATTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAGGAGTT
CATGGAACAGAGTGAGGAGCTGTATGACGCTCTGATGGACTGTCACTGGCAGCCCCTGGACACAGTGTCT
TCAGAGATCCCTGCCATGATGTAG

Translation (287 aa):
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL
PGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYG
FVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYD
QNTGSYSYSYPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVS
SEIPAMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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