NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4899.1 Public Homo sapiens 6 YIPF3 24 110 108 CCDS HistoryNCBI Gene:25844Re-query CCDS DB by CCDS ID:4899.1Re-query CCDS DB by GeneID:25844See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4899.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372422.7 ENSP00000361499.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372422.7Link to Ensembl Protein Viewer:ENSP00000361499.2Re-query CCDS DB by Nucleotide ID:ENST00000372422Re-query CCDS DB by Protein ID:ENSP00000361499
Original member Current member NCBI NM_015388.4 NP_056203.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015388.4Link to Protein Sequence:NP_056203.2Re-query CCDS DB by Nucleotide ID:NM_015388Re-query CCDS DB by Protein ID:NP_056203Link to BLAST:NP_056203.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056203.2 350 Q9GZM5 350 100% 0 0

Chromosomal Locations for CCDS 4899.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43512167 43512315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43512440 43512563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43512761 43512874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43513069 43513200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43513359 43513451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43513588 43513633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43515595 43515701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43515889 43516095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43516727 43516807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCAACTACAGCGGCGCCGGCGGGCGGCGCCCGAAATGGAGCTGGCCCGGAATGGGGAGGGTTCGAAG
AAAACATCCAGGGCGGAGGCTCAGCTGTGATTGACATGGAGAACATGGATGATACCTCAGGCTCTAGCTT
CGAGGATATGGGTGAGCTGCATCAGCGCCTGCGCGAGGAAGAAGTAGACGCTGATGCAGCTGATGCAGCT
GCTGCTGAAGAGGAGGATGGAGAGTTCCTGGGCATGAAGGGCTTTAAGGGACAGCTGAGCCGGCAGGTGG
CAGATCAGATGTGGCAGGCTGGGAAAAGACAAGCCTCCAGGGCCTTCAGCTTGTACGCCAACATCGACAT
CCTCAGACCCTACTTTGATGTGGAGCCTGCTCAGGTGCGAAGCAGGCTCCTGGAGTCCATGATCCCTATC
AAGATGGTCAACTTCCCCCAGAAAATTGCAGGTGAACTCTATGGACCTCTCATGCTGGTCTTCACTCTGG
TTGCTATCCTACTCCATGGGATGAAGACGTCTGACACTATTATCCGGGAGGGCACCCTGATGGGCACAGC
CATTGGCACCTGCTTCGGCTACTGGCTGGGAGTCTCATCCTTCATTTACTTCCTTGCCTACCTGTGCAAC
GCCCAGATCACCATGCTGCAGATGTTGGCACTGCTGGGCTATGGCCTCTTTGGGCATTGCATTGTCCTGT
TCATCACCTATAATATCCACCTCCACGCCCTCTTCTACCTCTTCTGGCTGTTGGTGGGTGGACTGTCCAC
ACTGCGCATGGTAGCAGTGTTGGTGTCTCGGACCGTGGGCCCCACACAGCGGCTGCTCCTCTGTGGCACC
CTGGCTGCCCTACACATGCTCTTCCTGCTCTATCTGCATTTTGCCTACCACAAAGTGGTAGAGGGGATCC
TGGACACACTGGAGGGCCCCAACATCCCGCCCATCCAGAGGGTCCCCAGAGACATCCCTGCCATGCTCCC
TGCTGCTCGGCTTCCCACCACCGTCCTCAACGCCACAGCCAAAGCTGTTGCGGTGACCCTGCAGTCACAC
TGA

Translation (350 aa):
MATTAAPAGGARNGAGPEWGGFEENIQGGGSAVIDMENMDDTSGSSFEDMGELHQRLREEEVDADAADAA
AAEEEDGEFLGMKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVEPAQVRSRLLESMIPI
KMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMGTAIGTCFGYWLGVSSFIYFLAYLCN
AQITMLQMLALLGYGLFGHCIVLFITYNIHLHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGT
LAALHMLFLLYLHFAYHKVVEGILDTLEGPNIPPIQRVPRDIPAMLPAARLPTTVLNATAKAVAVTLQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH