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Report for CCDS42225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42225.1 Public Homo sapiens 17 TRARG1 24 110 108 CCDS HistoryNCBI Gene:286753Re-query CCDS DB by CCDS ID:42225.1Re-query CCDS DB by GeneID:286753See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42225.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333813.4 ENSP00000329548.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333813.4Link to Ensembl Protein Viewer:ENSP00000329548.3Re-query CCDS DB by Nucleotide ID:ENST00000333813Re-query CCDS DB by Protein ID:ENSP00000329548
Original member Current member NCBI NM_172367.3 NP_758955.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172367.3Link to Protein Sequence:NP_758955.2Re-query CCDS DB by Nucleotide ID:NM_172367Re-query CCDS DB by Protein ID:NP_758955Link to BLAST:NP_758955.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758955.2 177 Q8IXB3 177 100% 0 0

Chromosomal Locations for CCDS 42225.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 1280002 1280388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1295491 1295623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1298251 1298264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGCCCACCCGGTGCAGTCCGAGTTTCCTTCAGCACAGGAGCCAGGCTCCGCCGCATTCCTGGACCTGC
CGGAGATGGAGATACTCCTCACCAAGGCAGAGAACAAGGATGACAAGACCCTGAATCTGTCCAAGACCCT
CTCGGGGCCTCTGGATCTGGAGCAGAACAGCCAGGGCCTACCCTTCAAGGCCATCTCCGAGGGGCACCTG
GAGGCCCCACTGCCTCGGTCCCCCTCCCGGGCCAGCTCAAGGAGGGCGTCCTCCATCGCCACCACCTCCT
ATGCCCAAGACCAAGAAGCCCCCAGAGATTACCTCATCCTGGCCGTCGTCGCCTGCTTCTGCCCCGTCTG
GCCCCTCAACCTCATCCCCCTCATCATTTCCATCATGTCTCGAAGCAGCATGCAACAGGGCAACGTGGAC
GGCGCCCGGAGGCTGGGCCGCCTGGCTCGGCTGCTCAGCATTACCCTCATCATCATGGGCATCGTCATTA
TCATGGTGGCCGTGACCGTCAACTTCACAGTTCAGAAGAAATAA

Translation (177 aa):
MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISEGHL
EAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQGNVD
GARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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