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Report for CCDS34606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34606.1 Public Homo sapiens 7 POLR1F 24 110 108 CCDS HistoryNCBI Gene:221830Re-query CCDS DB by CCDS ID:34606.1Re-query CCDS DB by GeneID:221830See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222567.6 ENSP00000222567.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222567.6Link to Ensembl Protein Viewer:ENSP00000222567.5Re-query CCDS DB by Nucleotide ID:ENST00000222567Re-query CCDS DB by Protein ID:ENSP00000222567
Original member Current member NCBI NM_001002926.2 NP_001002926.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002926.2Link to Protein Sequence:NP_001002926.1Re-query CCDS DB by Nucleotide ID:NM_001002926Re-query CCDS DB by Protein ID:NP_001002926Link to BLAST:NP_001002926.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002926.1 338 Q3B726 338 100% 0 0

Chromosomal Locations for CCDS 34606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19698316 19698727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19700072 19700280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19704779 19704920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19708763 19709016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGCTGCAGGTTGCTCAGAGGCGCCGCGGCCAGCGGCGGCTTCTGATGGGTCTCTGGTAGGGCAGGCTG
GCGTCCTGCCTTGCCTAGAGTTGCCGACTTATGCCGCTGCTTGTGCGCTGGTGAACAGTCGCTACTCATG
CCTGGTGGCCGGGCCGCACCAAAGGCACATCGCGCTGTCGCCCCGCTACCTTAACAGGAAACGCACCGGC
ATTCGAGAACAGCTTGATGCGGAGCTCCTTCGCTATTCTGAGAGCCTTTTAGGTGTCCCTATTGCATATG
ATAACATCAAAGTTGTGGGAGAGCTTGGAGATATTTATGATGATCAAGGACACATTCATCTTAACATTGA
AGCCGATTTTGTTATTTTCTGCCCTGAACCAGGGCAGAAGCTTATGGGTATAGTTAATAAAGTGTCTTCT
AGCCACATTGGCTGTTTAGTACATGGGTGTTTCAATGCCTCCATTCCTAAACCTGAGCAGTTGTCAGCTG
AGCAGTGGCAAACCATGGAGATAAACATGGGTGATGAACTAGAATTTGAAGTATTTCGTTTAGACTCAGA
TGCTGCTGGAGTATTCTGCATTCGGGGAAAACTAAATATCACAAGTTTACAATTCAAGCGCTCTGAAGTT
TCTGAAGAAGTTACAGAAAATGGCACTGAGGAAGCTGCTAAAAAACCTAAAAAGAAGAAAAAGAAGAAAG
ACCCAGAGACATATGAAGTGGACAGTGGTACCACAAAGCTAGCAGATGATGCAGATGACACTCCAATGGA
AGAGTCAGCCCTGCAGAATACTAATAATGCGAATGGCATCTGGGAGGAGGAGCCAAAGAAAAAGAAGAAG
AAGAAAAAGCACCAGGAAGTTCAGGACCAGGACCCTGTTTTCCAAGGCAGTGACTCCAGTGGTTACCAAA
GTGACCATAAAAAGAAAAAAAAGAAAAGAAAACACAGTGAAGAGGCCGAATTTACCCCACCTTTGAAATG
CTCACCAAAAAGAAAAGGGAAAAGTAATTTTCTTTAG

Translation (338 aa):
MAAGCSEAPRPAAASDGSLVGQAGVLPCLELPTYAAACALVNSRYSCLVAGPHQRHIALSPRYLNRKRTG
IREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSS
SHIGCLVHGCFNASIPKPEQLSAEQWQTMEINMGDELEFEVFRLDSDAAGVFCIRGKLNITSLQFKRSEV
SEEVTENGTEEAAKKPKKKKKKKDPETYEVDSGTTKLADDADDTPMEESALQNTNNANGIWEEEPKKKKK
KKKHQEVQDQDPVFQGSDSSGYQSDHKKKKKKRKHSEEAEFTPPLKCSPKRKGKSNFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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