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Report for CCDS2709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2709.1 Public Homo sapiens 3 POMGNT2 24 110 108 CCDS HistoryNCBI Gene:84892Re-query CCDS DB by CCDS ID:2709.1Re-query CCDS DB by GeneID:84892See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2709.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344697.3 ENSP00000344125.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344697.3Link to Ensembl Protein Viewer:ENSP00000344125.2Re-query CCDS DB by Nucleotide ID:ENST00000344697Re-query CCDS DB by Protein ID:ENSP00000344125
Original member Current member EBI ENST00000441964.1 ENSP00000408992.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441964.1Link to Ensembl Protein Viewer:ENSP00000408992.1Re-query CCDS DB by Nucleotide ID:ENST00000441964Re-query CCDS DB by Protein ID:ENSP00000408992
Original member Current member EBI ENST00000686643.1 ENSP00000509123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686643.1Link to Ensembl Protein Viewer:ENSP00000509123.1Re-query CCDS DB by Nucleotide ID:ENST00000686643Re-query CCDS DB by Protein ID:ENSP00000509123
Original member Current member EBI ENST00000687440.1 ENSP00000509610.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687440.1Link to Ensembl Protein Viewer:ENSP00000509610.1Re-query CCDS DB by Nucleotide ID:ENST00000687440Re-query CCDS DB by Protein ID:ENSP00000509610
Original member Current member EBI ENST00000692017.1 ENSP00000510571.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692017.1Link to Ensembl Protein Viewer:ENSP00000510571.1Re-query CCDS DB by Nucleotide ID:ENST00000692017Re-query CCDS DB by Protein ID:ENSP00000510571
Original member Current member EBI ENST00000689987.1 ENSP00000510646.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689987.1Link to Ensembl Protein Viewer:ENSP00000510646.1Re-query CCDS DB by Nucleotide ID:ENST00000689987Re-query CCDS DB by Protein ID:ENSP00000510646
Original member Current member EBI ENST00000693717.1 ENSP00000510801.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693717.1Link to Ensembl Protein Viewer:ENSP00000510801.1Re-query CCDS DB by Nucleotide ID:ENST00000693717Re-query CCDS DB by Protein ID:ENSP00000510801
Original member Current member NCBI NM_032806.6 NP_116195.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032806.6Link to Protein Sequence:NP_116195.2Re-query CCDS DB by Nucleotide ID:NM_032806Re-query CCDS DB by Protein ID:NP_116195Link to BLAST:NP_116195.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116195.2 580 Q8NAT1 580 100% 0 0

Chromosomal Locations for CCDS 2709.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 43079689 43081431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1743 nt):
ATGCACCTCTCGGCGGTGTTCAACGCCCTCCTGGTGTCGGTGCTGGCAGCGGTCCTGTGGAAGCATGTGC
GGCTGCGTGAGCATGCAGCCACACTGGAGGAGGAGCTGGCCCTCAGCCGACAGGCCACAGAGCCAGCCCC
AGCACTGAGGATCGACTACCCGAAGGCACTGCAGATCCTGATGGAGGGCGGCACACACATGGTGTGCACG
GGCCGCACGCACACAGACCGCATCTGCCGCTTCAAGTGGCTCTGCTACTCCAACGAGGCTGAGGAGTTCA
TCTTCTTCCATGGCAACACCTCTGTCATGCTGCCCAACCTGGGCTCCCGGCGCTTCCAGCCAGCCCTGCT
CGACCTATCCACCGTGGAGGACCACAACACTCAGTACTTCAACTTCGTGGAGCTGCCTGCTGCTGCCCTG
CGCTTCATGCCCAAGCCGGTGTTCGTGCCAGACGTGGCCCTCATCGCCAACCGCTTCAACCCCGACAACC
TCATGCACGTCTTTCATGACGACCTGCTGCCACTCTTCTACACCCTGCGGCAGTTTCCCGGCCTGGCCCA
CGAGGCACGGCTCTTCTTCATGGAGGGCTGGGGCGAGGGTGCACACTTCGACCTCTACAAGCTGCTCAGC
CCCAAGCAGCCTCTCCTGCGGGCACAGCTGAAGACCCTGGGCCGGCTGCTGTGCTTCTCCCATGCTTTTG
TGGGCCTCTCCAAGATCACTACCTGGTACCAGTATGGCTTTGTGCAGCCCCAGGGCCCGAAGGCCAACAT
CCTCGTCTCAGGCAATGAGATCCGGCAGTTTGCACGGTTCATGACAGAAAAGCTGAACGTGAGCCACACA
GGAGTCCCCCTAGGCGAGGAGTACATTCTGGTCTTTAGCCGAACCCAGAACAGACTCATTCTGAATGAGG
CAGAGCTGCTGCTGGCACTGGCCCAGGAGTTCCAGATGAAGACAGTGACAGTGTCCCTGGAGGACCACAC
CTTTGCTGATGTCGTGCGGCTGGTCAGCAATGCCTCCATGCTGGTCAGCATGCATGGGGCCCAGCTGGTC
ACCACCCTCTTCCTGCCCCGTGGGGCAACTGTGGTAGAGCTCTTCCCATATGCTGTCAATCCCGACCACT
ACACTCCCTATAAGACGCTGGCCATGCTGCCTGGCATGGACCTCCAGTATGTAGCCTGGCGGAACATGAT
GCCAGAGAACACAGTCACACACCCTGAGCGGCCCTGGGATCAGGGGGGCATCACCCATCTGGACCGGGCT
GAGCAAGCCCGTATCCTGCAAAGCCGTGAGGTCCCACGGCATCTCTGTTGCCGGAACCCCGAGTGGCTCT
TCCGAATCTACCAGGACACCAAGGTGGACATCCCGTCCCTCATTCAAACCATACGGCGCGTGGTGAAGGG
CCGGCCAGGACCACGGAAGCAGAAGTGGACAGTCGGCCTATATCCAGGCAAGGTGCGGGAGGCACGGTGC
CAGGCGTCAGTGCATGGCGCCTCCGAGGCCCGCCTCACTGTCTCCTGGCAGATCCCATGGAACCTTAAAT
ACCTGAAGGTGAGGGAGGTGAAGTACGAGGTGTGGCTGCAGGAGCAGGGGGAGAACACCTACGTGCCTTA
CATCCTGGCTCTGCAGAACCACACCTTCACTGAGAACATCAAGCCCTTCACCACCTACCTGGTGTGGGTC
CGCTGCATCTTCAACAAGATCCTCCTGGGACCCTTTGCAGATGTGCTGGTGTGCAACACGTAG

Translation (580 aa):
MHLSAVFNALLVSVLAAVLWKHVRLREHAATLEEELALSRQATEPAPALRIDYPKALQILMEGGTHMVCT
GRTHTDRICRFKWLCYSNEAEEFIFFHGNTSVMLPNLGSRRFQPALLDLSTVEDHNTQYFNFVELPAAAL
RFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLRQFPGLAHEARLFFMEGWGEGAHFDLYKLLS
PKQPLLRAQLKTLGRLLCFSHAFVGLSKITTWYQYGFVQPQGPKANILVSGNEIRQFARFMTEKLNVSHT
GVPLGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLV
TTLFLPRGATVVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRA
EQARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQKWTVGLYPGKVREARC
QASVHGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYILALQNHTFTENIKPFTTYLVWV
RCIFNKILLGPFADVLVCNT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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