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Report for CCDS6288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6288.1 Public Homo sapiens 8 SNX31 24 110 108 CCDS HistoryNCBI Gene:169166Re-query CCDS DB by CCDS ID:6288.1Re-query CCDS DB by GeneID:169166See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6288.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311812.7 ENSP00000312368.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311812.7Link to Ensembl Protein Viewer:ENSP00000312368.2Re-query CCDS DB by Nucleotide ID:ENST00000311812Re-query CCDS DB by Protein ID:ENSP00000312368
Original member Current member NCBI NM_152628.4 NP_689841.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152628.4Link to Protein Sequence:NP_689841.3Re-query CCDS DB by Nucleotide ID:NM_152628Re-query CCDS DB by Protein ID:NP_689841Link to BLAST:NP_689841.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689841.3 440 Q8N9S9-1 440 100% 0 0

Chromosomal Locations for CCDS 6288.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 100573865 100573960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100577019 100577075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100584111 100584188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100588866 100588979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100596639 100596842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100600349 100600441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100608494 100608563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100612000 100612087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100612995 100613085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100617620 100617730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100630327 100630391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100635897 100636011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100649274 100649348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 100649449 100649514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGAAGATGCATTTCTGTATCCCGGTGTCCCAGCAGCGGTCCGACGCGCTGGGGGGCCGCTACGTGCTGT
ACTCCGTGCACCTGGACGGGTTCCTCTTCTGCAGGGTGCGCTACAGCCAGCTGCACGGTTGGAACGAACA
GCTAAGGCGGGTCTTTGGAAATTGCCTGCCACCCTTCCCACCAAAGTACTATCTGGCAATGACCACAGCT
ATGGCTGATGAGAGGAGGGACCAACTGGAACAATATTTGCAAAATGTAACCATGGACCCAAACGTGTTGA
GAAGTGATGTCTTCGTTGAGTTTTTAAAACTGGCGCAGCTGAATACATTTGACATCGCCACCAAGAAAGC
TTATCTGGACATATTTCTGCCCAATGAACAGAGTATTAGAATCGAAATTATAACATCAGACACTGCTGAA
AGAGTCCTAGAGGTGGTGTCACACAAAATTGGACTGTGTCGAGAGCTCTTGGGCTACTTCGGCCTCTTTC
TCATTCGGTTTGGCAAGGAGGGCAAGCTCTCTGTTGTGAAAAAATTGGCTGACTTTGAACTCCCTTATGT
TAGTCTTGGAAGTTCTGAGGTGGAAAACTGTAAGGTTGGACTCCGAAAGTGGTATATGGCTCCATCCCTC
GACTCCGTGCTGATGGACTGCAGGGTGGCGGTAGATTTGCTCTACATGCAGGCAATACAGGACATTGAAA
AAGGATGGGCCAAACCCACACAGGCACAGAGGCAGAAATTAGAAGCTTTCCAGAAAGAAGACAGTCAAAC
AAAGTTTTTGGAGCTGGCCCGGGAGGTACGGCACTATGGATACCTGCAGCTGGATCCTTGTACCTGTGAC
TACCCAGAATCAGGCTCTGGAGCTGTTCTTTCTGTTGGCAATAATGAGATCAGCTGCTGCATCACCCTGC
CTGACAGCCAGACCCAGGACATCGTTTTCCAGATGAGCAGGGTGAAGTGCTGGCAGGTCACTTTCCTTGG
AACTCTGCTGGATACGGATGGGCCCCAGAGAACTCTCAACCAGAACTTAGAGCTCAGATTTCAATACAGT
GAGGATAGTTGCTGGCAGTGGTTTGTTATTTACACCAAACAGGCTTTTTTGCTGAGTAGCTGCTTGAAAA
AGATGATCTCAGAAAAGATGGTAAAGCTAGCTGCTGAGAATACAGAAATGCAGATTGAAGTTCCGGAACA
AAGCAAAAGTAAAAAATACCACATTCAACAAAGCCAGCAGAAAGACTATTCTAGTTTTCTATCAAGAAAA
AGCAAGATTAAGATAGCTAAAGATGACTGCGTTTTTGGGAACATAAAGGAAGAAGATCTCTGA

Translation (440 aa):
MKMHFCIPVSQQRSDALGGRYVLYSVHLDGFLFCRVRYSQLHGWNEQLRRVFGNCLPPFPPKYYLAMTTA
MADERRDQLEQYLQNVTMDPNVLRSDVFVEFLKLAQLNTFDIATKKAYLDIFLPNEQSIRIEIITSDTAE
RVLEVVSHKIGLCRELLGYFGLFLIRFGKEGKLSVVKKLADFELPYVSLGSSEVENCKVGLRKWYMAPSL
DSVLMDCRVAVDLLYMQAIQDIEKGWAKPTQAQRQKLEAFQKEDSQTKFLELAREVRHYGYLQLDPCTCD
YPESGSGAVLSVGNNEISCCITLPDSQTQDIVFQMSRVKCWQVTFLGTLLDTDGPQRTLNQNLELRFQYS
EDSCWQWFVIYTKQAFLLSSCLKKMISEKMVKLAAENTEMQIEVPEQSKSKKYHIQQSQQKDYSSFLSRK
SKIKIAKDDCVFGNIKEEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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