NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54818.1 Public Homo sapiens 4 PALLD 24 110 108 CCDS HistoryNCBI Gene:23022Re-query CCDS DB by CCDS ID:54818.1Re-query CCDS DB by GeneID:23022See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54818.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000505667.6 ENSP00000425556.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000505667.6Link to Ensembl Protein Viewer:ENSP00000425556.1Re-query CCDS DB by Nucleotide ID:ENST00000505667Re-query CCDS DB by Protein ID:ENSP00000425556
Original member Current member NCBI NM_001166108.2 NP_001159580.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001166108.2Link to Protein Sequence:NP_001159580.1Re-query CCDS DB by Nucleotide ID:NM_001166108Re-query CCDS DB by Protein ID:NP_001159580Link to BLAST:NP_001159580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159580.1 1123 Q8WX93-9 1123 100% 0 0

Chromosomal Locations for CCDS 54818.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 168511505 168512412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168668190 168668368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168681332 168681398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168682998 168683103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168685485 168685559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168690603 168690744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168691269 168691292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168709028 168709147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168711581 168711923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168890922 168891057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168894579 168894677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168896549 168896599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168898493 168898714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168903757 168903906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168913927 168914021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168915895 168916027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168921534 168921741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168924255 168924420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168924945 168925078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168925233 168925246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3372 nt):
ATGTCAGGGACCTCCTCCCATGAGTCCTTCTATGACTCCCTCTCAGACATGCAGGAAGAAAGCAAGAATA
CTGACTTCTTCCCGGGCCTTTCTGCTTTCCTCAGCCAGGAAGAGATAAACAAGAGTCTTGACCTGGCCCG
GAGAGCCATAGCCGACTCCGAAACAGAAGATTTTGACTCGGAAAAGGAGATCTCGCAGATTTTCAGTACT
TCTCCTGCAAGCCTCTGTGAACATCCTTCCCATAAGGAGACCAAATTGGGTGAACACGCCTCGAGGAGAC
CTCAGGATAACAGGTCAACACCTGTCCAGCCTCTGGCAGAGAAACAAACTAAGAGTATCTCTTCACCTGT
TTCAAAGAGGAAACCTGCCATGTCACCCCTGCTCACCAGGCCCAGCTACATCCGGAGCCTCCGAAAGGCT
GAAAAGCGTGGTGCAAAAACTCCCAGCACAAACGTAAAGCCCAAAACGCCACATCAAAGAAAGGGTGGCC
CCCAGAGCCAGCTGTGTGACAAGGCAGCTAATTTAATTGAGGAGCTAACATCCATATTTAAAGCCGCAAA
GCCAAGAAACAGAAGCCCAAATGGGGAGTCCTCGTCACCAGACAGTGGGTACCTGTCTCCTAAAAATCAG
CCGTCAGCCCTGCTGAGTGCCTCAGCCAGCCAGAGCCCTATGGAAGACCAAGGGGAGATGGAAAGAGAGG
TCAAGTCCCCTGGGGCCAGGCATTGCTACCAGGACAACCAGGACTTGGCAGTGCCACACAACCGCAAGTC
TCACCCACAGCCCCACAGCGCCCTCCACTTCCCAGCTGCACCTCGATTCATCCAAAAGCTGAGGAGCCAA
GAAGTAGCAGAAGGGAGCCGAGTTTATCTGGAGTGTAGAGTCACTGGAAACCCCACTCCTCGAGTCAGAT
GGTTCTGTGAAGGGAAAGAACTGCACAACACTCCTGATATTCAAATCCACTGTGAGGGAGGGGACCTCCA
TACCCTGATCATAGCAGAGGCCTTTGAGGACGACACAGGTCGCTACACCTGTTTGGCTACGAATCCCAGC
GGCTCAGACACAACATCTGCTGAGGTGTTCATTGAAGGTGCCAGTTCAACAGATTCTGACAGTGAAAGTT
TAGCTTTCAAATCAAGAGCTGGAGCTATGCCACAAGCTCAAAAGAAAACAACTTCTGTTTCCTTGACAAT
AGGATCATCATCTCCAAAGACAGGGGTGACCACAGCTGTGATTCAACCACTGTCTGTCCCTGTGCAACAG
GTTCACAGTCCAACTTCATATCTCTGCCGACCTGATGGAACCACTACTGCCTACTTTCCTCCTGTTTTTA
CAAAGGAACTGCAAAACACAGCCGTGGCGGAAGGCCAGGTGGTGGTTCTGGAGTGCCGGGTCCGTGGGGC
ACCCCCTCTGCAGGTCCAGTGGTTTCGGCAAGGGAGTGAAATCCAAGACTCTCCAGATTTCCGAATTCTA
CAGAAAAAACCTAGATCTACAGCTGAACCTGAGGAGATTTGCACCCTAGTTATCGCTGAGACTTTCCCTG
AAGATGCAGGGATCTTTACATGTTCAGCAAGAAATGATTATGGATCAGCAACCAGCACTGCCCAGCTGGT
TGTCACCTCAGCCAACACTGAAAACTGTAGTTACGAGTCAATGGGAGAATCCAACAATGACCACTTCCAA
CACTTTCCACCTCCCCCTCCAATCTTGGAGACAAGTTCCTTGGAGTTGGCTTCAAAGAAACCATCTGAGA
TCCAGCAGGTGAACAACCCTGAGTTAGGCCTGAGCAGGGCAGCCCTTCAAATGCAATTCAATGCTGCTGA
GAGGGAAACGAACGGAGTCCATCCCAGCCGTGGAGTAAATGGACTGATTAACGGCAAAGCTAACAGTAAT
AAATCTCTTCCAACACCAGCTGTCCTGCTTTCACCCACTAAGGAGCCACCACCTCTGCTTGCCAAACCAA
AACTAGGATTTCCAAAGAAGGCCAGTAGAACTGCTAGAATAGCCTCCGATGAGGAAATTCAAGGCACAAA
GGATGCTGTTATTCAAGACCTGGAACGAAAACTTCGCTTCAAGGAGGACCTCCTGAACAATGGCCAGCCG
AGGTTAACATACGAAGAAAGAATGGCTCGTCGACTGCTAGGTGCTGACAGTGCAACTGTCTTTAATATTC
AGGAGCCAGAAGAGGAAACAGCTAATCAGGACATTGGTTCTCCTCATGCTTCTGTAGGGAGTCCTCTGGA
TGGTCAAAAGGAATACAAAGTCTCCAGCTGTGAACAGAGACTCATCAGTGAAATAGAGTACAGGCTAGAA
AGGTCTCCTGTGGATGAATCAGGTGATGAAGTTCAGTATGGAGATGTGCCTGTGGAAAATGGAATGGCAC
CATTCTTTGAGATGAAGCTGAAACATTACAAGATCTTTGAGGGAATGCCAGTAACTTTCACATGTAGAGT
GGCTGGAAATCCAAAGCCAAAGATCTATTGGTTTAAAGATGGGAAGCAGATCTCTCCAAAGAGTGATCAC
TACACCATTCAAAGAGATCTCGATGGGACCTGCTCCCTCCATACCACAGCCTCCACCCTAGATGATGATG
GGAATTATACAATTATGGCTGCAAACCCTCAGGGCCGCATCAGTTGTACTGGACGGCTAATGGTACAGGC
TGTCAACCAAAGAGGTCGAAGTCCCCGGTCTCCCTCAGGCCATCCTCATGTCAGAAGGCCTCGTTCTAGA
TCAAGGGACAGTGGAGACGAAAATGAACCAATTCAGGAGCGATTCTTCAGACCTCACTTCTTGCAGGCTC
CTGGAGATCTGACTGTTCAAGAAGGAAAACTCTGCAGAATGGACTGCAAAGTCAGTGGGTTACCAACCCC
AGATCTAAGCTGGCAACTAGATGGAAAGCCCGTACGCCCTGACAGTGCTCACAAGATGCTGGTGCGTGAG
AACGGGGTGCACTCTCTGATCATAGAGCCAGTCACGTCACGTGATGCCGGCATCTACACATGTATAGCTA
CCAACCGAGCAGGACAGAACTCATTCAGCCTGGAGCTTGTGGTTGCTGCTAAAGAAGCACACAAACCCCC
TGTGTTTATTGAGAAGCTCCAAAACACAGGAGTTGCTGATGGGTACCCAGTGCGGCTGGAATGTCGTGTA
TTGGGAGTGCCACCACCTCAGATATTTTGGAAGAAAGAAAATGAATCACTCACTCACAGCACTGACCGAG
TGAGCATGCACCAGGACAACCACGGCTACATCTGCCTGCTCATTCAGGGAGCCACAAAAGAAGATGCTGG
GTGGTATACTGTGTCAGCCAAGAATGAAGCAGGGATTGTGTCCTGTACTGCCAGGCTGGACGTTTACATT
TCTCGACATTAA

Translation (1123 aa):
MSGTSSHESFYDSLSDMQEESKNTDFFPGLSAFLSQEEINKSLDLARRAIADSETEDFDSEKEISQIFST
SPASLCEHPSHKETKLGEHASRRPQDNRSTPVQPLAEKQTKSISSPVSKRKPAMSPLLTRPSYIRSLRKA
EKRGAKTPSTNVKPKTPHQRKGGPQSQLCDKAANLIEELTSIFKAAKPRNRSPNGESSSPDSGYLSPKNQ
PSALLSASASQSPMEDQGEMEREVKSPGARHCYQDNQDLAVPHNRKSHPQPHSALHFPAAPRFIQKLRSQ
EVAEGSRVYLECRVTGNPTPRVRWFCEGKELHNTPDIQIHCEGGDLHTLIIAEAFEDDTGRYTCLATNPS
GSDTTSAEVFIEGASSTDSDSESLAFKSRAGAMPQAQKKTTSVSLTIGSSSPKTGVTTAVIQPLSVPVQQ
VHSPTSYLCRPDGTTTAYFPPVFTKELQNTAVAEGQVVVLECRVRGAPPLQVQWFRQGSEIQDSPDFRIL
QKKPRSTAEPEEICTLVIAETFPEDAGIFTCSARNDYGSATSTAQLVVTSANTENCSYESMGESNNDHFQ
HFPPPPPILETSSLELASKKPSEIQQVNNPELGLSRAALQMQFNAAERETNGVHPSRGVNGLINGKANSN
KSLPTPAVLLSPTKEPPPLLAKPKLGFPKKASRTARIASDEEIQGTKDAVIQDLERKLRFKEDLLNNGQP
RLTYEERMARRLLGADSATVFNIQEPEEETANQDIGSPHASVGSPLDGQKEYKVSSCEQRLISEIEYRLE
RSPVDESGDEVQYGDVPVENGMAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH
YTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNQRGRSPRSPSGHPHVRRPRSR
SRDSGDENEPIQERFFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE
NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKEAHKPPVFIEKLQNTGVADGYPVRLECRV
LGVPPPQIFWKKENESLTHSTDRVSMHQDNHGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDVYI
SRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH