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Report for CCDS322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
322.1 Public Homo sapiens 1 MED18 24 110 108 CCDS HistoryNCBI Gene:54797Re-query CCDS DB by CCDS ID:322.1Re-query CCDS DB by GeneID:54797See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 322.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373842.9 ENSP00000362948.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373842.9Link to Ensembl Protein Viewer:ENSP00000362948.4Re-query CCDS DB by Nucleotide ID:ENST00000373842Re-query CCDS DB by Protein ID:ENSP00000362948
Original member Current member EBI ENST00000398997.2 ENSP00000381963.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398997.2Link to Ensembl Protein Viewer:ENSP00000381963.2Re-query CCDS DB by Nucleotide ID:ENST00000398997Re-query CCDS DB by Protein ID:ENSP00000381963
Original member Current member NCBI NM_001127350.2 NP_001120822.1 Accepted alive Link to Nucleotide Sequence:NM_001127350.2Link to Protein Sequence:NP_001120822.1Re-query CCDS DB by Nucleotide ID:NM_001127350Re-query CCDS DB by Protein ID:NP_001120822Link to BLAST:NP_001120822.1
Original member Current member NCBI NM_017638.3 NP_060108.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017638.3Link to Protein Sequence:NP_060108.2Re-query CCDS DB by Nucleotide ID:NM_017638Re-query CCDS DB by Protein ID:NP_060108Link to BLAST:NP_060108.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120822.1 208 Q9BUE0 208 100% 0 0
NP_060108.2 208 Q9BUE0 208 100% 0 0

Chromosomal Locations for CCDS 322.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28330663 28330735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28334417 28334970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGAGGCACCTCCAGTCACCATGATGCCTGTCACTGGGGGCACCATTAACATGATGGAGTACCTGTTGC
AGGGAAGTGTTTTAGATCACAGTTTGGAAAGCCTCATCCACCGCCTTCGTGGTTTGTGTGACAACATGGA
ACCTGAGACTTTCCTTGACCATGAGATGGTATTCCTCCTTAAGGGCCAGCAAGCCAGCCCATTTGTTCTC
AGGGCCCGACGCTCTATGGACAGGGCAGGGGCACCCTGGCATCTGCGCTACCTGGGACAGCCAGAAATGG
GAGACAAGAACCGCCATGCCCTGGTGCGAAACTGCGTGGACATTGCCACATCTGAGAACCTCACCGACTT
CTTGATGGAAATGGGCTTCCGCATGGACCATGAGTTTGTTGCTAAGGGACATTTGTTCCGTAAGGGCATC
ATGAAGATTATGGTGTACAAGATTTTCCGCATCCTGGTGCCAGGGAACACAGACAGCACTGAGGCCTTGT
CACTCTCCTATCTCGTGGAATTAAGTGTGGTAGCACCCGCTGGGCAGGACATGGTCTCTGATGACATGAA
GAACTTCGCAGAACAGCTAAAACCTCTGGTTCACCTAGAGAAAATAGACCCCAAGAGGCTCATGTGA

Translation (208 aa):
MEAPPVTMMPVTGGTINMMEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLKGQQASPFVL
RARRSMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGI
MKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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