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Report for CCDS11290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11290.1 Public Homo sapiens 17 FNDC8 24 110 108 CCDS HistoryNCBI Gene:54752Re-query CCDS DB by CCDS ID:11290.1Re-query CCDS DB by GeneID:54752See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11290.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000158009.6 ENSP00000158009.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000158009.6Link to Ensembl Protein Viewer:ENSP00000158009.4Re-query CCDS DB by Nucleotide ID:ENST00000158009Re-query CCDS DB by Protein ID:ENSP00000158009
Original member Current member NCBI NM_017559.4 NP_060029.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017559.4Link to Protein Sequence:NP_060029.1Re-query CCDS DB by Nucleotide ID:NM_017559Re-query CCDS DB by Protein ID:NP_060029Link to BLAST:NP_060029.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060029.1 324 Q8TC99 324 100% 0 0

Chromosomal Locations for CCDS 11290.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35121694 35121902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35127042 35127417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35129422 35129658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35130282 35130434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGCATCAGAGGCACTCCATCAAGTGGGAGATGGGGAGGAGGCTGTACTGAAGAAAGAAAACTTCAACA
TGATGAATGCCCTTGACCAACTGCCAAAACCCTTTTCAAACCCCAAGTCTATGAACCGGACCGTCACTAC
CAAAGGACTCCCACTAGCCTCAAAGGGCAATTTGGTCAACTTCTTGGAGGATGATACCATCAACCTACTG
AAGCCGCTGCCAGTAGAGGATTCAGACTGCAGCTCTGATGAGACCAGCATCTCTGCCTTCTCATCCACCT
TGCTGAACCCCATCAAATTAGCTGTGACCCAGCCCAACAGCAGCTTCTTTGCAGGGATGCTGGAGGGGGA
GCTGAACAAACTCAGCTTCTCCCCAATGGCCAAGAATGCAGAAAATGAGGACCTGGCGCTCGGCCCCTGC
CCATGCCCATCGAAGTCCCAGATGGCCACAAGGGGCCTGCTGGACCTTGACAACCCTGAGCTGGAGACAG
AAACCTCCTCAACGCACTCAGAATCTTCTGTGGTTGTGGACCTGCCGGACACCCCCTTCATCTTTGAGCA
CACCGTCAACAATTCCACAGCTGTGATTTCCTGGACCTACGCCTTGGGCAAGCAGCCGGTCAGTTTCTAC
CAGCTCCTGTTACAGGAGGTGGCCAAGACACAGGAGAATGAGTTGCCCGAGGCAAAGAATCGTCCATGGA
TCTTCAACAAGATTTTGGGCACTACTGTCAAGCTGATGGAGCTAAAGCCTAACACGTGTTACTGCCTCAG
TGTCCGTGCAGCCAACACAGCTGGGGTGGGGAAGTGGTGCAAGCCCTACAAATTTGCAACCCTGGCCACT
GACTTCAGCAGCTTTCCTGAGAACTACCCCATCCAGATCACCGTGCGGCGCAAGGAACCCCGGCAAAAGA
TCGTGTCCATCGGGCCGGAGGAGATGCGGAGGCTGGAGGATCTGGAATACCTATTTCCCTGTTAA

Translation (324 aa):
MASEALHQVGDGEEAVLKKENFNMMNALDQLPKPFSNPKSMNRTVTTKGLPLASKGNLVNFLEDDTINLL
KPLPVEDSDCSSDETSISAFSSTLLNPIKLAVTQPNSSFFAGMLEGELNKLSFSPMAKNAENEDLALGPC
PCPSKSQMATRGLLDLDNPELETETSSTHSESSVVVDLPDTPFIFEHTVNNSTAVISWTYALGKQPVSFY
QLLLQEVAKTQENELPEAKNRPWIFNKILGTTVKLMELKPNTCYCLSVRAANTAGVGKWCKPYKFATLAT
DFSSFPENYPIQITVRRKEPRQKIVSIGPEEMRRLEDLEYLFPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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